Host relatedness and landscape connectivity shape pathogen spread in a large secretive carnivore

Fountain-Jones, N. M.; Kraberger, S.; Gagne, R.; Trumbo, D. R.; Salerno, P.; Funk, W. C.; Crooks, K.; Biek, R.; Alldredge, M.; Logan, K.; Baele, G.; Dellicour, S. M.; Ernest, H. B.; VandeWoude, S.; Carver, S.; Craft, M. E.

doi:10.1101/816009

bioRxiv · 10.1101/816009

Host relatedness and landscape connectivity shape pathogen spread in a large secretive carnivore

Fountain-Jones, N. M.·Kraberger, S.·Gagne, R.·Trumbo, D. R.·Salerno, P.·Funk, W. C.·Crooks, K.·Biek, R.·Alldredge, M.·Logan, K.·Baele, G.·Dellicour, S. M.·Ernest, H. B.·VandeWoude, S.·Carver, S.·Craft, M. E.

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Abstract

Urban expansion can fundamentally alter wildlife movement and gene flow, but how urbanization alters pathogen spread is poorly understood. Here we combine high resolution host and viral genomic data with landscape variables to examine the context of viral spread in puma from two contrasting regions: one bounded by the wildland urban interface (WUI) and one unbounded with minimal anthropogenic development. We found landscape variables and host gene flow explained significant amounts of variation of feline immunodeficiency virus (FIV) spread in the WUI, but not in the unbounded region. The most important predictors of viral spread also differed; host spatial proximity, host relatedness, and mountain ranges played a role in FIV spread in the WUI, whereas unpaved roads were more important in the unbounded region. Our research demonstrates how anthropogenic landscapes can alter pathogen spread, providing a more nuanced understanding of host-pathogen relationships to inform disease ecology in free-ranging species.

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Fountain-Jones, N. M., Kraberger, S., Gagne, R., Trumbo, D. R., Salerno, P., Funk, W. C., Crooks, K., Biek, R., Alldredge, M., Logan, K., Baele, G., Dellicour, S. M., Ernest, H. B., VandeWoude, S., Carver, S., Craft, M. E.. 2019-10-23. Host relatedness and landscape connectivity shape pathogen spread in a large secretive carnivore. https://doi.org/10.1101/816009

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