Search bioRxiv⌕ Search

bioRxiv · 10.1101/640037

FoxMask: a new automated tool for animal detection in camera trap images

Abstract

O_LICamera traps now represent a reliable, efficient and cost-effective technique to monitor wildlife and collect biological data in the field. However, efficiently extracting information from the massive amount of images generated is often extremely time-consuming and may now represent the most rate-limiting step in camera trap studies.\nC_LIO_LITo help overcome this challenge, we developed FoxMask, a new tool performing the automatic detection of animal presence in short sequences of camera trap images. FoxMask uses background estimation and foreground segmentation algorithms to detect the presence of moving objects (most likely, animals) on images.\nC_LIO_LIWe analyzed a sample dataset from camera traps used to monitor activity on arctic fox Vulpes lagopus dens to test the parameter settings and the performance of the algorithm. The shape and color of arctic foxes, their background at snowmelt and during the summer growing season were highly variable, thus offering challenging testing conditions. We compared the automated animal detection performed by FoxMask to a manual review of the image series.\nC_LIO_LIThe performance analysis indicated that the proportion of images correctly classified by FoxMask as containing an animal or not was very high (> 90%). FoxMask is thus highly efficient at reducing the workload by eliminating most false triggers (images without an animal). We provide parameter recommendations to facilitate usage and we present the cases where the algorithm performs less efficiently to stimulate further development.\nC_LIO_LIFoxMask is an easy-to-use tool freely available to ecologists performing camera trap data extraction. By minimizing analytical time, computer-assisted image analysis will allow collection of increased sample sizes and testing of new biological questions.\nC_LI

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Devost, E., Lai, S., Casajus, N., Berteaux, D.. 2019-05-17. FoxMask: a new automated tool for animal detection in camera trap images. https://doi.org/10.1101/640037

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Phenotypic variation in divergent mitochondrial haplotypes in migratory three-spined stickleback

Mitochondria are essential components in life-sustaining organismal processes. The mitochondrial genome can be influenced by selection, and divergent mitochondrial haplotypes have substantial potential to affect interspecies variation in life-history and physiology, yet little is known about whole organism phenotypic changes that might accompany mitochondrial genomic divergence. Three-spined stickleback on the Scottish island of North Uist provide a model to study this as their populations exhibit a well-mixed nuclear genome, yet two highly diverged mitochondrial haplotypes ( trans-Atlantic and European). Three-spined stickleback were sampled from six lochs to investigate associations between mitochondrial haplotype and phenotypic traits including organ size, body size, and ovule volume/clutch size, as well as citrate synthase enzyme activity. Results showed that mitochondrial haplotype has an influence on male gonadosomatic index (GSI) and potentially citrate synthase (CS) enzyme activity. Differences in male GSI may be explained by the timing of male spermatogenesis or potentially a need for larger testes in European haplotype fish. While no other phenotypic trait showed differences between mitochondrial haplotypes, there were many differences between sexes and populations e.g. in body size and organ/muscle size.

ecology↗

Gregariousness can promote invasion success of pest insects while higher environmental heterogeneity decreases it

Climate change and environmental homogenization are expected to facilitate the expansion of many forest pest insect species and increase the vulnerability of forest ecosystems to insect outbreaks. At present, we lack empirical data on how the antipredator defence traits of pest insects interact with the local environmental conditions and shape outbreak risk. Here we study this and ask 1) how the antipredator defence strategy of pest insects shapes survival under naturally varying predator community, and 2) how is predation risk shaped by the diversity and structure of forests? We tested these questions by conducting a field predation experiment with artificial prey system (prey items made from edible dough) where we manipulated the gregariousness, unpalatability and defensive colouration of prey and tested their effects on prey survival. Additionally, we measured environmental variables and invertebrate predator community structure along the prey transects to analyse how they shape overall predation risk. Our results show that the predation risk was always lowest for gregarious prey irrespective of other defence strategies. Furthermore, our results indicate that predation pressure was lower in more homogenously structured forest areas or areas with a weak quality deadwood continuum in comparison to locations with more natural state forests and good quality deadwood continuum. Altogether, our results suggest that gregariousness can facilitate pest insects to form outbreaks by increasing their survival against generalist predators. However, by maintaining higher heterogeneity in forests, it is possible to ensure higher predation pressure to regulate their population growth.

ecology↗

Two decades of EU pesticide substitution have not reduced impacts on stream invertebrates

Chemical regulation assumes that withdrawing hazardous substances and replacing them with alternatives reduces environmental harm. We tested this premise within the EU pesticide regulatory framework using a 23-year record of event-driven pesticide exposure and stream-invertebrate communities from 152 German agricultural streams sampled between 1998 and 2021. Neither pesticide toxic pressure nor pesticide-related invertebrate impairment showed a detectable decline over time, and an improvement equivalent to one ecological status class can be excluded. Dominant toxicity drivers shifted from organophosphates to neonicotinoids and subsequently to pyrethroids, yet the relationship between toxic pressure and community effects remained consistent despite their distinct modes of action. Sustained toxic pressure reflected three mechanisms: successive chemical substitution, prolonged approval periods, and continued exposure to substances no longer authorised as plant protection products. Substitution thus changed which chemicals harm streams, not how much. Measured field outcomes must become the benchmark of pesticide regulation.

ecology↗