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bioRxiv · 10.1101/480020

Biochat: a database for natural language processing of Gene Expression Omnibus data

Khomtchouk, B. B.·Dyomkin, V.·Vand, K. A.·Assimes, T.·Gozani, O.
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Abstract

A biological datasets metadata profile (e.g., study description, organism name, sequencing type, etc.) typically contains terse but descriptive textual information that can be used to link it with other similar biological datasets for the purpose of integrating omics data of different types to inform hypotheses and biological questions. Here we present Biochat, a database containing a multi-omics data integration support system to aid in cross-linking Gene Expression Omnibus (GEO) records to each other by metadata similarity through a user-friendly web application. Biochat is publicly available at: http://www.biochat.ai. Biochat source code is hosted at: https://github.com/Bohdan-Khomtchouk/Bio-chat.\n\nDatabase URLhttps://github.com/Bohdan-Khomtchouk/Bio-chat

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Khomtchouk, B. B., Dyomkin, V., Vand, K. A., Assimes, T., Gozani, O.. 2018-11-27. Biochat: a database for natural language processing of Gene Expression Omnibus data. https://doi.org/10.1101/480020

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