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Gozani, O.

Publications and source records attributed to Gozani, O..

2 recordsLinked to original sources

HeartBioPortal: an internet-of-omics for human cardiovascular disease data

Cardiovascular disease (CVD) is the leading cause of death worldwide, responsible for over 17 million deaths annually, a rate which outpaces even that related to cancer. Despite these sobering statistics, the state-of-the-art in computational infrastructure for the study of contemporary datasets related to CVD lags substantially behind that widely available in oncology, where improved data science and visualization methods have delivered publicly available comprehensive cancer genomics resources like Memorial Sloan Kettering Cancer Centers cBioPortal1,2 and the National Cancer Institutes Genomic Data Commons (GDC) Portal3,4. In our view, such portals do an outstanding job of transforming data from The Cancer Genome Atlas (TCGA) into logical data visualizations that provide additional biological insight. Developing a similar user-friendly computational platform for CVD could signi ...

bioinformatics

Biochat: a database for natural language processing of Gene Expression Omnibus data

A biological datasets metadata profile (e.g., study description, organism name, sequencing type, etc.) typically contains terse but descriptive textual information that can be used to link it with other similar biological datasets for the purpose of integrating omics data of different types to inform hypotheses and biological questions. Here we present Biochat, a database containing a multi-omics data integration support system to aid in cross-linking Gene Expression Omnibus (GEO) records to each other by metadata similarity through a user-friendly web application. Biochat is publicly available at: http://www.biochat.ai. Biochat source code is hosted at: https://github.com/Bohdan-Khomtchouk/Bio-chat.\n\nDatabase URLhttps://github.com/Bohdan-Khomtchouk/Bio-chat

bioinformatics