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bioRxiv · 10.1101/2025.11.26.690630

Azimuthal Segment Imaging in cryo-STEM Tomography

Kirchweger, P.·Seifer, S.·Wolf, S. G.·Varsano, N.·Zens, B.·Schur, F. K.·Elbaum, M.
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Abstract

Cryo-electron microscopy is transitioning from investigation of isolated macromolecules to in situ studies bridging the realms of structural and cellular biology. Newly available detector technologies enable unconventional contrast modes with particular advantages. Here we demonstrate application of quadrant diode detectors to visualize a range of biological specimens by cryo-Scanning Transmission Electron Tomography (cryo-STET). Theoretically, we decompose coherent contrast by parallax analysis to isolate phase and amplitude contributions in specimens too thick for energy-filtered TEM. We thereby expand the cryo-STEM toolchest to parallax-filtered bright field (pBF) and parallax-filtered integrated differential phase contrast ({pi}DPC) and demonstrate their advantages in tomography using T4-bacteriophages, whole cells, and cryo-lift-out lamellae of cellular multilayers. The results show significant improvements over traditional STEM modalities in a realm where conventional wide-field transmission EM imaging methods are not applicable. The commercial availability of such detectors and the relative ease and speed of image reconstruction should make this realm accessible to the broader community in life science EM and beyond. TeaserParallax-corrected cryo-STET imaging provides coherent phase and amplitude contrast of thick biological specimens.

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Kirchweger, P., Seifer, S., Wolf, S. G., Varsano, N., Zens, B., Schur, F. K., Elbaum, M.. 2025-11-29. Azimuthal Segment Imaging in cryo-STEM Tomography. https://doi.org/10.1101/2025.11.26.690630

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