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bioRxiv · 10.1101/2024.04.18.590091

Spatial Transcriptomics in Mechanomics: New Horizons in Exploring the Mechanoregulation of Bone Regeneration

Mathavan, N.·Singh, A.·Correia Marques, F.·Günther, D.·Kuhn, G.·Wehrle, E.·Müller, R.
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Abstract

In recent decades, the field of bone mechanobiology has sought experimental techniques to unravel the molecular mechanisms governing the phenomenon of mechanically-regulated fracture healing. Each cell within a fracture site resides within different local micro-environments characterized by different levels of mechanical strain - thus, preserving the spatial location of each cell is critical in relating cellular responses to mechanical stimuli. Our spatial transcriptomics based "mechanomics" platform facilitates spatially-resolved analysis of the molecular profiles of cells with respect to their local in vivo mechanical environment by integrating time-lapsed in vivo micro-computed tomography, spatial transcriptomics, and micro-finite element analysis. We investigate the transcriptomic responses of cells as a function of the local strain magnitude by identifying the differential expression of genes in regions of high and low strain within a fracture site. Our platform thus has the potential to address fundamental open questions within the field and to discover mechano-responsive targets to enhance fracture healing.

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Mathavan, N., Singh, A., Correia Marques, F., Günther, D., Kuhn, G., Wehrle, E., Müller, R.. 2024-04-22. Spatial Transcriptomics in Mechanomics: New Horizons in Exploring the Mechanoregulation of Bone Regeneration. https://doi.org/10.1101/2024.04.18.590091

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