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bioRxiv · 10.1101/2021.11.19.468211

A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource

Machado, A.·Gomes-dos-Santos, A.·Fonseca, M.·Fonseca, R. d.·Verissimo, A.·Felicio, M.·Capela, R.·Alves, N.·Santos, M.·Salvador-Caramelo, F.·Domingues, M.·Ruivo, R.·Froufe, E.·Castro, F.
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Abstract

The Atlantic chub mackerel, Scomber colias Gmelin, 1789, is a medium-size pelagic fish with substantial importance in the fisheries of the Atlantic Ocean and the Mediterranean Sea. Over the past decade, this species has gained special relevance being one of the main targets of pelagic fisheries in the NE Atlantic. Here, we sequenced and annotated the first high-quality draft genome assembly of S. colias, produced with Pacbio HiFi long reads and Illumina Paired-End short reads. The estimated genome size is 814 Mb distributed into 2,028 scaffolds and 2,093 contigs with an N50 length of 4,19 and 3,34 Mb, respectively. We annotated 27,675 protein-coding genes and the BUSCO analyses indicated high completeness, with 97.3 % of the single-copy orthologs in the Actinopterygii library profile. The present genome assembly represents a valuable resource to address the biology and management of this relevant fishery. Finally, this is the fourth high-quality genome assembly within the Order Scombriformes and the first in the genus Scomber.

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Machado, A., Gomes-dos-Santos, A., Fonseca, M., Fonseca, R. d., Verissimo, A., Felicio, M., Capela, R., Alves, N., Santos, M., Salvador-Caramelo, F., Domingues, M., Ruivo, R., Froufe, E., Castro, F.. 2021-11-20. A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource. https://doi.org/10.1101/2021.11.19.468211

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