Biology subjects

Santos, M.

Publications and source records attributed to Santos, M..

At least 19 recordsLinked to original sources

bioRxiv2026

Carboxymethyl Dextran Coated Iron Oxide Magnetic Nanoparticles as Vehicles for CRISPR Ribonucleoproteins

The efficient and safe intracellular delivery of CRISPR ribonucleoproteins (RNPs) remains a major challenge for the development of genome editing strategies. Magnetic iron oxide nanoparticles (MNPs) offer an attractive and biocompatible delivery platform. However, their use for the delivery of functional CRISPR RNPs remains comparatively underexplored. Here, we developed carboxymethyl dextran (CMD)-coated MNPs as non-viral carriers for Cas9 and Cas12a RNPs. Nanocomplexes were formed through electrostatic interactions, without the need for chemical coupling reagents or additional surface functionalization. Both RNPs efficiently associated with MNPs, and the resulting nanocomplexes exhibited stable physicochemical properties and retained their cargo in serum-supplemented culture medium for up to 24 hours. Cellular uptake was confirmed by microscopy, while biocompatibility assays revealed no overt cytotoxicity. Functional genome editing was demonstrated at reporter and endogenous gene loci in HEK-293T cells, as well as in primary human dermal fibroblasts. Finally, we explored the therapeutic potential of this platform for recessive dystrophic epidermolysis bullosa (RDEB) by targeting COL7A1 exon 80, with the aim of removing the prevalent c.6527insC mutation while preserving the reading frame. Cas9 RNP nanocomplexes enabled exon 80 deletion. These findings establish CMD-coated MNPs as a versatile platform for the delivery of Cas9 and Cas12a RNPs and support further investigation of magnetic nanoparticle-mediated genome editing for inherited skin disorders.

molecular biology↗

bioRxiv2026

Nuclear translocation of phosphorylated YB-1 via small extracellular vesicles contributes to the malignant phenotype of triple negative breast cancer

Despite continuous progress in diagnosis and therapy, breast carcinoma (BC) remains a major health problem. Triple-negative (Estrogen Receptor-/Progesterone Receptor-/HER2-) breast cancer (TNBC) is the most aggressive subtype due to its high metastatic potential and resistance to chemotherapy. The Y-box binding protein 1 (YB-1) transcription factor, a protein present in both cytoplasm and nucleus, is a driver of TNBC malignancy as it stimulates its cancer stem cell phenotype and disrupts cell cycle progression. Here, we hypothesized that YB-1-containing sEVs deliver YB-1 to the nuclear compartment of recipient cancer cells and play a major role in the activation of the metastatic process. We found a selective enrichment of YB-1 in sEVs from MDA and 4T1 cells, with [~]65% and 50% of all sEVs positive for YB-1 by d-STORM. Administration of sEVs from wild-type MDA and 4T1 to their YB-1 knockout counterparts resulted in nuclear translocation of sEV-associated YB-1 and increased tumorsphere formation. Pharmacological blockade of the nuclear transport machinery based on the inhibition of the formation of the "VOR" complex (VAP-A-ORP3-Rab7) by PRR851 impaired both nuclear translocation and the YB-1-induced increase in tumorsphere formation. YB-1 phosphorylation at S102 was required for nuclear localization. In fact, loss of YB-1 phosphorylation inhibited tumorsphere growth and stemness of cancer cells and YB-1-positive sEVs restored the oncogenic behavior of cancer cells expressing phospho-mutant YB-1. Moreover, PRR851 inhibited the nuclear translocation of the phosphorylated form of YB-1 and the oncogenic behavior of the TNBC cells. These data support the conclusion that the nuclear translocation of sEV-associated phosphorylated YB-1 is an important factor in the malignant behavior of TNBC and a potential therapeutic target.

cancer biology↗

bioRxiv2026

Lessening the bottleneck: reduced spatiotemporal overlap between krill fishing vessels and post-fledging chinstrap penguins led to increased apparent survival

Fledging is a critical period of a seabird life cycle. Using satellite telemetry, we compared movements and survival proxies (transmission duration) of chinstrap penguin fledglings tracked in 2017 (n=8) and 2025 (n=17) relative to krill fishing vessel activity. In 2017, fishing vessels operated intensively near colonies during summer, resulting in early, frequent encounters (median 1.3 days post-fledging) and short transmission durations (median 9.2 days). In 2025, reduced fishing delayed encounters (median 10.0 days) and tripled tracking duration (median 24.0 days). Hidden Markov Models revealed that vessel encounters reduced the probability of transitioning from foraging to transit behavior ({beta} = -0.76), an effect stronger than the productivity ({beta} = -0.11). While 87.5% of 2017 fledglings ceased transmission prematurely within weeks (half of those right after entering areas intensively used by fishing vessels), 65% of 2025 fledglings survived beyond March, with half of those five transmitting until May after dispersing eastward to the South Orkney Islands. These findings suggest that spatiotemporal overlap with krill fisheries during the critical post-fledging window affected foraging behavior and was associated with shorter transmission durations. Our results support further research of post-fledging penguin ecology to better understand the potential impact of fishery, and, following the precautionary principle, support fishing seasonal protection of important areas during critical periods of krill predators life cycle.

ecology↗

bioRxiv2026

Ocular findings in Northern Gannets following an outbreak of high pathogenicity avian influenza (H5N1)

BackgroundDuring 2021-2022, high pathogenicity avian influenza (HPAI) caused mass mortality in wild birds across Europe, with Northern Gannets (Morus bassanus) among the most affected. Following the outbreak, unusual alterations in the species characteristic pale iris were observed in some individuals. MethodsOpportunistically captured gannets on Bass Rock (n=52), selected to represent a range of iris pigmentation, were examined. Slit-lamp biomicroscopy, indirect ophthalmoscopy, rebound tonometry and photography were performed. Iris pigmentation was classified as normal, mottled or black. Eleven birds underwent avian influenza virus (AIV) serology. Histopathology was performed on two eyes. ResultsAbnormal iris pigmentation was found in 74% of adult and immature gannets, with 61% affected bilaterally. Additional signs consistent with uveitis were present in 77% of affected birds. Iris pigmentation abnormalities were positively associated with AIV H5 seropositivity (Fishers exact test, P=0.018). Histopathology from affected eyes showed increased melanin deposition and disorganisation, including loss of a distinct anterior layer of melanocytic cells and hypertrophy of melanocytes within the iris stroma. LimitationsField conditions limited uniform lighting and concurrent serology. ConclusionsIris pigmentation changes were associated with prior HPAI exposure and frequently accompanied by signs of uveitis, suggesting iris alterations may indicate past infection and potential chronic sequelae.

physiology↗

bioRxiv2026

Eco-Friendly Antifouling Solutions: Hazard Assessment of Synthetic Derivatives of Natural Compounds

The accumulation of microorganisms and macroorganisms on aquatic surfaces poses economic and ecological challenges, particularly in maritime transport. Traditional antifouling methods, such as biocidal coatings containing toxic compounds like tributyltin (TBT) and copper, are effective but harmful to the environment. This study investigates eco-friendly antifouling alternatives, focusing on nature-inspired compounds (NIAFs) GBA 26 (GBA) and DPC345DHC (DH345), derived from polyphenols and flavonoids, respectively. The ecotoxicity of these compounds was evaluated using standardized assays with various species, including embryos of Danio rerio (zebrafish) (OECD TG 236), the algae Raphidocelis subcapitata (OECD TG 201), and the bacteria Vibrio fischeri (ISO 11348-2), along with nuclear receptor transactivation assays in Mytilus galloprovincialis (Mediterranean mussel). Gallic acid derivative GBA and 24h-transformation products showed low toxicity in zebrafish embryos, while dihydrochalcone DH345 inflicted developmental toxicity in zebrafish at 1 mg/L and above. Comparatively, tralopyril, a commercial biocide, exhibited significant toxicity at lower concentrations. Transcriptomic analysis of zebrafish embryos treated with GBA revealed selective gene modulation related to stress response, ion transport, and protein synthesis. Both, GBA and DH345, were shown to inhibit algae growth at 0.1 mg/L. Vibrio fischeri assay showed no toxic effects for any of the tested compounds. Nuclear receptor transactivation assays conducted with GBA revealed no activation of PPAR or PXR receptors. These findings suggest GBA and DH345 as potential eco-friendly antifouling agents with lower environmental risks than established antifoulants such as tralopyril. However, further research is needed to evaluate their potential long-term ecological impacts, particularly chronic toxicity across various organisms. This study advances the pursuit of sustainable antifouling solutions that prioritize environmental protection.

ecology↗

bioRxiv2026

Is DNA metabarcoding an option for formaldehyde-preserved zooplankton time series?

The recovery of amplifiable DNA from formaldehyde{square}fixed (FF) zooplankton samples has long been considered unfeasible. Nevertheless, advances in DNA sequencing and methods for retrieving highly degraded genetic material have demonstrated that even million{square}year{square}old samples and FF museum specimens can yield usable DNA. To access the biological information preserved in long{square}term zooplankton time series, we assessed methodologies for extracting amplifiable DNA from community samples stored for up to 28 years in formaldehyde at room temperature. On one hand, we report the failure of a method previously described as successful for FF zooplankton samples, likely due to the cold{square}storage conditions (4{square}{degrees}C) used in the original study. On the other hand, by adapting two extraction protocols designed for FF museum specimens--representing harsher and softer alternatives (HHA and HPC, respectively)--we successfully amplified and sequenced a subset of FF zooplankton samples. As expected, DNA integrity and sample pH were inversely related to preservation time, and only short DNA fragments were recovered, ruling out the use of commonly employed [≥]300{square}bp metabarcoding markers. While DNA integrity appeared to be a better predictor than DNA yield for amplification success, the presence of a gel band of the expected size did not always guarantee congruence with microscopy{square}based assessments. Although amplifiable DNA was recovered from most samples, including some of the oldest, community compositions concordant with microscopy were consistently recovered only from samples preserved for up to two years. Beyond this point, the HHA and HPC methods produced divergent results, reflecting a trade{square}off between the removal of formaldehyde{square}induced cross{square}linkages and the avoidance of additional DNA damage. Among the small universal markers tested ([~]120-170{square}bp), including one nuclear rRNA marker and two mitochondrial markers, only the 18S rRNA V9 region consistently amplified. We conclude by providing a set of recommendations aimed at improving the methods presented here.

zoology↗

bioRxiv2026

Repeated and widespread introduction of a mosquito-borne virus, but wildlife impact remains localised in urban area

Mosquito-borne viruses are emerging in new regions with increasing regularity. Shifting climatic envelopes, especially in temperate regions, and altered enzootic cycles are changing likelihoods of persistence, meaning new approaches are required to predict and monitor establishment. Usutu virus (USUV) is a mosquito-borne viral zoonosis, which was first recorded in the United Kingdom in wild birds and mosquitoes in 2020. By developing a multidisciplinary approach, incorporating enhanced passive and active surveillance of wild birds, we discovered previously unrecorded introductions and identified USUV persistence and geographic expansion. By combining molecular and serological testing with citizen science derived datasets, we show an associated marked decline in a common, widespread, and highly susceptible host species (Eurasian Blackbird, Turdus merula). However, the clearest continuous signal of host population decline remains localised to a large urban area, despite the much wider virus distribution. This may be a consequence of an urban heat island effect and associated increase in length of the mosquito active season. Our results indicate that the establishment and impact of future mosquito-borne pathogens in temperate zones, anticipated under climate change, may first be most apparent in urban areas. Consequently, enhanced surveillance efforts in urban areas could provide an efficient mechanism for detecting novel pathogen emergence. The epidemiology of emerging vector-borne diseases, especially in temperate areas, depends on the interplay between climate, land-use and available hosts; therefore, considering each in isolation will not be sufficient to reliably inform surveillance or response planning.

ecology↗

bioRxiv2025

Engineering a Biomimetic Multiphasic Suture Anchor System for Enhanced Rotator Cuff Enthesis Regeneration

Conventional suture anchor methods in rotator cuff repair often fail to replicate the native tendon-to-bone interface, leading to re-tears due to stress concentrations and poor biological integration at anchor sites. To address these challenges, we engineered a biomimetic multiphasic scaffold system (BMS) that integrates with standard suture anchors and deliver spatially organized structural and biological cues to enhance enthesis regeneration. The BMS comprises three distinct phases: aligned nanofibrous decellularized bovine Achilles tendon extracellular matrix (dECM) with stiff methacrylated hyaluronic acid (MeHA) for tendon regeneration; nonaligned nanofibrous dECM with soft MeHA for fibrocartilage formation; and a porous, citrate-based composite scaffold with bioactive glass for bone integration. In vitro, the BMS facilitated zone-specific tenogenic, fibrochondrogenic, and chondrogenic differentiation. Further, in vivo, it promoted successful integrative healing, forming distinct tendon, fibrocartilage, and bone regions at the repair site. This advanced multiphasic scaffold replicates native tissue properties, offering a promising strategy to improve rotator cuff repair. Its integration with conventional suture anchors provides an innovative design that enhances mechanical fixation and guides enthesis healing to reduce re-tear rates. Broadly, this platform offers a versatile solution for biointegrative repair strategies across complex soft-to-hard tissue interfaces.

bioengineering↗

bioRxiv2025

Detection of West Nile Virus via Retrospective Mosquito Arbovirus Surveillance in the United Kingdom

In March 2025, as part of on-going enhanced surveillance for mosquito-borne Orthoflaviviruses, West Nile virus (WNV) RNA was detected in two pools of female Aedes vexans collected in July 2023 in Nottinghamshire, England. Viral RNA detection was achieved via reverse transcription-qPCR. Sequencing and subsequent phylogenetic analysis of a 402 bp fragment indicated that the detections clustered with WNV lineage 1a. The exact origin of this virus remains unclear, but this finding indicates a historic WNV presence in the United Kingdom (UK). Surveillance has not provided evidence of further viral transmission to date.

molecular biology↗

bioRxiv2025

Modelling Fragile X-Associated Neuropsychiatric Disorders in Young Inducible 90CGG Premutation Mice

Fragile X-associated tremor/ataxia syndrome (FXTAS) is a late-onset neurodegenerative disorder caused by a preCGG repeat expansion in the FMR1 gene. Individuals with the FMR1 premutation often exhibit neuropsychiatric symptoms before FXTAS onset, leading to the identification of fragile X-associated neuropsychiatric disorders (FXAND). Rodent models of FXTAS show motor impairments, pathological intranuclear inclusions, and heightened anxiety. However, the early onset of neuropsychiatric features and underlying mechanisms remain poorly understood. To address the above issues, we used the doxycycline (dox)-inducible 90CGG mouse model, with transgene activation at two developmental stages: adolescence and young adulthood. Mice were evaluated in a behavioural battery to assess anxiety-like behaviour, exploration, and motor coordination and learning. Next, we conducted a combination of ex vivo extracellular local field potential recordings to measure synaptic physiology and oscillatory activity in the limbic system, particularly in the basolateral amygdala (BLA) and ventral hippocampus (vH) regions. Parvalbumin interneurons and intranuclear inclusions in the amygdala and hippocampus were investigated by immunofluorescence, while mass spectrometry and gene set enrichment were used to identify differentially expressed proteins molecular pathways. Adolescent 90CGG mice displayed early-onset hyperactivity, transitioning to heightened anxiety in young adulthood, coinciding with the accumulation of intranuclear inclusions in the BLA and vH. Electrophysiological analysis revealed augmented gamma oscillations in the vH, emerging during adolescence and persisting in young adulthood. These changes correlated with a reduction in parvalbumin interneurons in these regions, and together likely contribute to enhanced BLA excitability and impaired vH plasticity. Finally, proteomic analysis of the vH revealed altered proteins linked to attention deficit hyperactivity disorder in adolescence and anxiety/depression in adulthood, aligning well with behavioural findings. Importantly, these behavioural, electrophysiological, and cellular alterations were reversible upon transgene inactivation. This study reveals a temporal progression of CGG premutation effects on behaviour, from hyperactivity to heightened anxiety to late onset motor dysfunction. Moreover, these findings provide altered network activity in the limbic system as a putative mechanism in neuropsychiatric features of premutation carriers.

neuroscience↗

bioRxiv2025

Rhamnose biosynthesis is not impaired by the deletion of putative rfbC genes, slr0985 and slr1933, in Synechocystis sp. PCC 6803

Cyanobacterial extracellular polymeric substances (EPS), mainly composed by heteropolysaccharides, can be attached to the cell wall (CPS) or released to the environment (RPS). These polymers have an unusually highly diversified monosaccharidic composition, making them attractive for biotechnological/biomedical applications. However, their production is still poorly understood hindering their optimisation for industrial needs. This work aimed at better understanding the biosynthesis of the 6-deoxysugars fucose and rhamnose in the model cyanobacterium Synechocystis sp. PCC 6803. To that end, genes encoding proteins putatively involved in the biosynthesis of GDP-L-fucose [sll1213 (fucS)] and dTDP-L-rhamnose [slr0985 (rfbC1) and slr1933 (rfbC2)] were deleted. As previously observed, {Delta}fucS had significant growth impairment and its RPS did not contain any fucose or rhamnose. Here, we also showed that both deoxyhexoses pathways are completely impaired in {Delta}fucS. In contrast, both {Delta}rfbC1 and {Delta}rfbC1{Delta}rfbC2 although producing significantly less RPS and more CPS than the wild type, did not show major differences regarding the RPS monosaccharidic composition. These results strongly suggest that their gene products are not essential for rhamnose biosynthesis. Transcriptional analysis revealed that one of the gmd genes (slr1072), putatively encoding a GDP-mannose 4,6-dehydratase, was upregulated in all the knockout strains, and that the three EPS-related genes in the same operon as rfbC1 (slr0982, slr0983 and slr1610) were upregulated in both {Delta}rfbC strains. Altogether, our results reveal that rhamnose biosynthesis in Synechocystis depends on FucS but not on the putative RfbC enzymes, underlining the need to further elucidate the mechanisms involved in the biosynthesis of this deoxyhexose. IMPORTANCEThis study contributes to the overall knowledge of deoxyhexoses biosynthesis in Synechocystis sp. PCC 6803. Here we demonstrated that the {Delta}fucS strain not only produces EPS without fucose and rhamnose but that both pathways are completely impaired. Furthermore, we also showed that the deletion of both putative rfbC genes do not affect rhamnose biosynthesis, despite having an impact on carbohydrates production/export, shifting RPS to CPS production. Altogether, our results suggest that the rfbC genes are not correctly annotated and highlight the intricacies and/or potential crosstalk between the two deoxyhexoses pathways, yet to be completely unravelled in Synechocystis. The understanding of cyanobacterial EPS assembly and export is crucial for the optimisation of their production and tailoring for industrial/commercial applications.

microbiology↗

bioRxiv2025

Bioindicator-based mapping of peatland potential in the Western Mediterranean-Atlantic Realm

Ecosystems with a naturally accumulated peat layer at the surface and wetlands with or without a peat layer dominated by a vegetation that may produce peat (hereafter peatlands for simplicity) are critical assets in global change due to their large carbon content storage capacity and essential ecosystem services. A Global Peatland Assessment was initiated during the UNFCCC COP22; however, many countries still lack accurate peatland maps. This is particularly concerning in the Western Mediterranean, where these ecosystems are frequently overlooked or misclassified. To help address this issue, we developed predictive distribution models for vascular plant and bryophyte species typical of peatland-type systems in the Western Mediterranean. We identified 28 indicator mire-typical plant taxa and created a database using filtered data from six different data sources, including our own field surveys. Thirteen high-resolution spatial predictor variables, covering topographic, soil, and hydroclimatic factors, were selected to reflect potential relationships with species presence. For each species, a potential distribution model was built using MaxEnt software. The resulting potential-distribution maps were cross-validated, and models with an AUC score of [≥]0.75 were classified into suitable or unsuitable areas. The species richness map aligned well with areas known to support peatlands. The indicator species-based mapping also suggests a broad potential for yet unrecorded peatlands in the Western Mediterranean, including small areas, particularly along the western and southwestern sandy coastlines and in the southern mountains.

ecology↗

bioRxiv2025

Identification of a novel papillary renal cell carcinoma molecular subtype characterized by HIF-pathway over-activation

PurposePapillary renal cell carcinoma (pRCC), the second most common subtype of renal cancer, exhibits heterogeneity in molecular features and response to targeted therapies, including antiangiogenic drugs. Discovering molecular biomarkers able to stratify pRCC patients into clinically relevant subgroups and understanding the underlying mechanisms are urgently needed to advance precision medicine. Here, we molecularly dissect a large pRCC series through the expression of the targets of hypoxia inducible factors (HIF), master regulators of angiogenesis, metabolic reprogramming and immune microenvironment. Experimental DesignWe merged and analyzed multi-omic and clinical data of 346 patients derived from two pRCC series (TCGA-KIRP and a Spanish metastatic series). Altered pathways and differences in tumor microenvironment were identified through tumor transcriptomic analyses. Tumor metabolome analysis was performed in selected cases. ResultsMolecular revision of driver mutations classified 302 patients as pRCC, while uncovering misclassified cases. Analysis of HIF targets gene expression identified a subset of pRCC tumors with increased HIF activity (31%; "HIF-active"). These tumors were characterized by high hypoxia scores, increased angiogenesis, low expression of Krebs cycle genes and mitochondrial activity, high immune infiltration and increased epithelial-mesenchymal transition (P<0.0001; each feature) and they were associated with increased metastasis risk and worse overall survival (P<0.005). Metabolome analyses revealed that HIF-active tumors accumulated L-2-hydroxyglutarate (L-2-HG), an oncometabolite that leads to pseudohypoxia by inhibiting HIF prolyl hydroxylases and preventing HIF degradation. L-2-HG-accumulation agreed with diminished L2HGDH expression, associated with losing one copy of the gene and low expression of PPARGC1A, which regulates its transcription. ConclusionsHIF-pathway overactivation defines a pseudohypoxic pRCC molecular subgroup characterized by high angiogenesis, immune infiltration and aggressive features. These findings advance our understanding of pRCC diversity, revealing potential clues for the variable response of patients to targeted therapies and paving the way to more personalized pRCC treatments.

cancer biology↗

bioRxiv2024

Rac1 inhibition prevents axonal cytoskeleton dysfunction in Transthyretin Amyloid Polyneuropathy

Hereditary transthyretin amyloidosis with polyneuropathy (ATTRv-PN) is characterized by the deposition of amyloidogenic TTR, particularly in dorsal root ganglia (DRG) and peripheral nerve axons, resulting in sensorimotor axonopathy with autonomic dysfunction. Here, we investigated cytoskeleton alterations in peripheral axons from an ATTRv-PN mouse model, the hTTRA97S knock-in mice. Proteomics of hTTRA97S sural nerves revealed dysregulation of actin-related proteins. hTTRA97S DRG neurons presented a defective actin distribution in growth cones along with a reduction in axonal actin trails, and an associated impairment in the pool of pre-synaptic vesicles. Microtubule dynamics and axonal transport abnormalities were also observed in mutant axons. Importantly, cytoskeletal defects in hTTRA97S neurons preceded axonal degeneration and were mediated by Rac1 hyperactivation in DRG neurites and sciatic nerves of pre-symptomatic mice. Rac1 inhibition rescued cytoskeleton alterations, preventing degeneration. Remarkably, in ATTRv-PN patients with late-onset disease, a variant in RACGAP1, encoding a Rac1 inactivator, supported the neuroprotective role of Rac1 inhibition. Our findings demonstrate that cytoskeletal defects precede axonal degeneration in ATTRv-PN and highlight Rac1 as a promising therapeutic target.

neuroscience↗

bioRxiv2024

The association of Mediterranean plant species with herbivorous arthropods and its effect on pest abundance in organic vineyards

Non-crop plant resources, such as hedgerows and adjacent woodland areas, may impact the distribution of pest species in the crop. Knowledge on the associations between plants and arthropods as well as their impact on pest distribution is thus key to adequately manage agroecosystems. We selected a number of native Mediterranean plant species located around organic vineyards in Southern Portugal and determined their associations with species of Auchenorrhyncha and phytophagous tetranychid and tenuipalpid mites, including the main species of vineyard pests in the area. We also tested if the abundance of vineyard pests is affected by the distance to the edge and the species of plants present. Most non-crop plants and ground cover vegetation harbored very low numbers of leafhopper pests. Rubus ulmifolius and Tamarix africana proved to be a repository of non-pest Auchenorrhyncha species, with the former also serving as winter repository of the pest Jacobiasca lybica. Rosa canina and Fraxinus angustifolia hosted abundant populations of the spider mite Tetranychus urticae. Still, plots next to plant biodiverse margins harbored fewer numbers of T. urticae, when compared with plots next to other vineyards. Furthermore, pest abundance in vineyards increased with growing distance to plant biodiverse margins. Our results high-light the benefits of biodiverse margins in reducing pest abundance and point to the importance of a good selection of plant species when managing and planning these non-crop plant resources.

ecology↗

bioRxiv2024

Red blood cell-tumour cell interactions promote tumour cell progression

One critical step in the metastatic cascade is the survival of circulating tumour cells (CTCs) within the bloodstream. While numerous interactions between CTCs and various hematopoietic cells have been described, the role of red blood cells (RBCs) in this process remains underexplored. This study investigates the interactions between tumour cells and RBCs from breast and lung cancer patients, revealing significant phenotypic and functional changes in the tumour cells, unlike when the contact is with RBCs from healthy donors. In vitro co-culture of cancer cell lines with RBCs from metastatic cancer patients resulted in increased tumour cell attachment accompanied by morphological changes. Additionally, RBCs-primed tumour cells showed increased adhesion and disruption of the endothelial barrier in vitro and increased invasiveness both in vitro and in vivo. Transcriptomic analysis showed that RBCs from metastatic breast cancer patients induce significant gene expression changes, notably upregulating PAK4, which enhances migration and epithelial-mesenchymal transition. PAK4 inhibition reduced these effects. Proteomic studies revealed substantial remodelling, including actin-related changes and the accumulation of VASP at cell edges, promoting directional migration. Clinically, higher RBC distribution width (RDW) in metastatic breast cancer patients is associated with increased CTC counts and worse outcome. This study highlights the previously unrecognized role of RBCs in promoting metastatic behaviours in cancer cells and suggests potential therapeutic targets, such as PAK4, to counteract these effects. Further exploration of RBCs-tumour cell interactions could provide new insights into metastatic mechanisms and improve cancer prognosis and treatment strategies. Key PointsO_LIThis study reveals the previously unknown role of RBCs in enhancing tumour cell invasiveness and metastatic potential. C_LIO_LITumour cells undergo significant phenotypic and functional changes after contact with RBCs from cancer patients. C_LI

cancer biology↗

bioRxiv2024

Visual detection of seizures in mice using supervised machine learning

1Seizures are caused by abnormally synchronous brain activity that can result in changes in muscle tone, such as twitching, stiffness, limpness, or rhythmic jerking. These behavioral manifestations are clear on visual inspection and the most widely used seizure scoring systems in preclinical models, such as the Racine scale in rodents, use these behavioral patterns in semiquantitative seizure intensity scores. However, visual inspection is time-consuming, low-throughput, and partially subjective, and there is a need for rigorously quantitative approaches that are scalable. In this study, we used supervised machine learning approaches to develop automated classifiers to predict seizure severity directly from noninvasive video data. Using the PTZ-induced seizure model in mice, we trained video-only classifiers to predict ictal events, combined these events to predict an univariate seizure intensity for a recording session, as well as time-varying seizure intensity scores. Our results show, for the first time, that seizure events and overall intensity can be rigorously quantified directly from overhead video of mice in a standard open field using supervised approaches. These results enable high-throughput, noninvasive, and standardized seizure scoring for downstream applications such as neurogenetics and therapeutic discovery.

neuroscience↗

bioRxiv2023

Tittle: An integrated analysis of the structural changes and gene expression of spleen in human visceral leishmaniasis with and without HIV coinfection

The spleen plays a pivotal role in the pathogenesis of visceral leishmaniasis. In severe forms of the disease, the spleen undergoes changes that can compromise its function in surveilling blood-circulating pathogens. In this study, we present an integrated analysis of the structural and gene expression alterations in the spleens of three patients with relapsing visceral leishmaniasis, two of whom were coinfected with HIV. Our findings reveal that the IL6 signaling pathway plays a significant role in the disorganization of the white pulp, while BCL10 and ICOSLG are associated with spleen organization. Patients coinfected with HIV and visceral leishmaniasis exhibited lower splenic CD4+ cell density and reduced expression of genes such as IL15. These effects may contribute to a compromised immune response against L. infantum in coinfected individuals, further impacting the structural organization of the spleen.

pathology↗