PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

Norgaard, M.; Matheson, G. J.; Hansen, H. D.; Thomas, A. G.; Searle, G.; Rizzo, G.; Veronese, M.; Giacomel, A.; Yaqub, M.; Tonietto, M.; Funck, T.; Gillman, A.; Boniface, H.; Routier, A.; Dalenberg, J. R.; Betthauser, T.; Feingold, F.; Markiewicz, C. J.; Gorgolewski, K. J.; Blair, R. W.; Appelhoff, S.; Gau, R.; Salo, T.; Niso, G.; Pernet, C.; Phillips, C.; Oostenveld, R.; Carson, R. E.; Gallezot, J.-D.; Knudsen, G. M.; Innis, R. B.; Ganz, M.

doi:10.1101/2021.06.16.448390

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bioRxiv · 10.1101/2021.06.16.448390

PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

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Abstract

The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets. It serves not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data (PET-BIDS). We describe the PET-BIDS standard in detail and share several open-access datasets curated following PET-BIDS. Additionally, we highlight several tools which are already available for converting, validating and analyzing PET-BIDS datasets.

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Norgaard, M., Matheson, G. J., Hansen, H. D., Thomas, A. G., Searle, G., Rizzo, G., Veronese, M., Giacomel, A., Yaqub, M., Tonietto, M., Funck, T., Gillman, A., Boniface, H., Routier, A., Dalenberg, J. R., Betthauser, T., Feingold, F., Markiewicz, C. J., Gorgolewski, K. J., Blair, R. W., Appelhoff, S., Gau, R., Salo, T., Niso, G., Pernet, C., Phillips, C., Oostenveld, R., Carson, R. E., Gallezot, J.-D., Knudsen, G. M., Innis, R. B., Ganz, M.. 2021-06-17. PET-BIDS, an extension to the brain imaging data structure for positron emission tomography. https://doi.org/10.1101/2021.06.16.448390

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