Librator, a platform for optimized sequence editing, design, and expression of influenza virus proteins

Li, L.; Stovicek, O.; Guthmiller, J. J.; Changrob, S.; Fu, Y.; Dugan, H. L.; Stamper, C. T.; Zheng, N.-Y.; Huang, M.; Wilson, P. C.

doi:10.1101/2021.04.29.441999

bioRxiv · 10.1101/2021.04.29.441999

Librator, a platform for optimized sequence editing, design, and expression of influenza virus proteins

Li, L.·Stovicek, O.·Guthmiller, J. J.·Changrob, S.·Fu, Y.·Dugan, H. L.·Stamper, C. T.·Zheng, N.-Y.·Huang, M.·Wilson, P. C.

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Abstract

Artificial mutagenesis and chimeric/mosaic protein engineering have laid the foundation for antigenic characterization1 and universal vaccine design2-4 for influenza viruses. However, many methods used for influenza research and vaccine development require sequence editing and protein expression, limiting their applicability and the progress of related research to specialists. Rapid tools allowing even novice influenza researchers to properly analyze and visualize influenza protein sequences with accurate nomenclature are needed to expand the research field. To address this need, we developed Librator, a system for analyzing and designing protein sequences of influenza virus Hemagglutinin (HA) and Neuraminidase (NA). With Librators graphical user interface (GUI) and built-in sequence editing functions, biologists can easily analyze influenza sequences and phylogenies, automatically port sequences to visualize structures, then readily mutate target residues and design sequences for antigen probes and chimeric/mosaic proteins efficiently and accurately. This system provides optimized fragment design for Gibson Assembly5 of HA and NA expression constructs based on peptide conservation of all historical HA and NA sequences, ensuring fragments are reusable and compatible, allowing for significant reagent savings. Use of Librator will significantly facilitate influenza research and vaccine antigen design.

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Li, L., Stovicek, O., Guthmiller, J. J., Changrob, S., Fu, Y., Dugan, H. L., Stamper, C. T., Zheng, N.-Y., Huang, M., Wilson, P. C.. 2021-04-29. Librator, a platform for optimized sequence editing, design, and expression of influenza virus proteins. https://doi.org/10.1101/2021.04.29.441999

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