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bioRxiv · 10.1101/148940

Genetics and epigenetic alterations of hexaploid early generation derived from hybrid between Brassica napus and B. oleracea

Li, Q.·Xiong, Z.·Mei, J.·Song, H.·Qian, W.
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Abstract

Good fertility was observed previously in hexaploid derived from hybrid (ACC) between calona Zhongshuang 9(Brassica napus, 2n = 38, AACC) and kale SWU01 (B. oleracea var. acephala, 2n = 18, CC). However, the mechanism to underlying the character is unknown. In the present study, genetic and epigenetic alterations of S0, 6 S1, and 18 of their S2 progenies with hexaploid chromosome conformation (20A + 36C) were selected to compare with ACC and their parental species. 13.08% and 26.45% polymorphism alleles different from two parental species were identified in ACC via 58 SSR (simple sequence repeats) and 14 MSAP (methylation sensitive amplified polymorphism), respectively. 33.74% new alleles in DNA methylation, but not in DNA sequence were detected in S0 after chromosome doubling of ACC. DNA profilling revealed a little genetic but much epigenetic differences among S0, S1 and S2 generations. Genetic alteration was relatively stable, because only 8.09% and 3.21% alleles inheriated from ACC were changed in S2 and S1, respectively. While on average of 52.44 {+/-} 5.32% DNA methylation site inherited from ACC were detected in S1, and 41.52 {+/-} 9.04% in S2 due to dramatic epigenetic variance among early generations. New DNA methylation sites occurred in S0 would inheritated into the successive generations, but the frequency was decreased because some new site might be recovered. It demonstrated that much DNA methylation but a little DNA sequence variance was occurred in hexaploid early generation.

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Li, Q., Xiong, Z., Mei, J., Song, H., Qian, W.. 2017-06-12. Genetics and epigenetic alterations of hexaploid early generation derived from hybrid between Brassica napus and B. oleracea. https://doi.org/10.1101/148940

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