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Biology subjects

Souza, A.

Publications and source records attributed to Souza, A..

3 recordsLinked to original sources

The Use of Fluid-phase 3D Printing to Pattern Alginate-gelatin Hydrogel Properties to Guide Cell Growth and Behaviour In Vitro

3D (bio)printing technology has boosted the advancement of the biomedical field. However, tissue engineering is in its infancy and (bio)printing biomimetic constructions for tissue formation in vitro is still a default. As a new methodology to improve in vitro studies, we suggest the use of a cross-linkable aqueous support bath to pattern the characteristics of the scaffolds during the 3D printing process. Using fluid-phase, different molecules can be added to specific locations of the substrate promoting cell behaviour guidance and compartmentalization. Moreover, mechanical aspects can be customized by changing the type or concentration of the solution in which the (bio)printing is acquired. In this study, we first assessed different formulations of alginate/gelatin to improve cell colonization in our printings. On formulations with lower gelatin content, the U2OS cells increased 2.83 times the cell growth. In addition, the alginate-gelatin hydrogel presented a good printability in both air and fluid-phase, however the fluid-phase printings showed better printing fidelity as it diminished the collapsing and the spreading of the hydrogel strand. Next, the fluid-phase methodology was used to guide cell colonization in our printings. First, different stiffness were created by crosslinking the hydrogel with different concentrations of CaCl2 during the printing process. As a result, the U2OS cells were compartmentalized on the stiffer parts of the printings. In addition, using fluid-phase to add RGD molecules to specific parts of the hydrogel has also promoted guidance on cell growth. Finally, our results showed that by combining stiffer alginate-gelatin hydrogel with RGD increasing concentrations we can create a synergetic effect and boost cell growth by up to 3.17-fold. This work presents a new printing process for tailoring multiple parameters in hydrogel substrates by using fluid-phase to generate a more faithful replication of the in vivo environment.

bioengineering↗

Quantifying physiological trait variation with automated hyperspectral imaging in rice

Advancements in hyperspectral imaging (HSI) and establishment of dedicated plant phenotyping facilities have enabled researchers to gather large quantities of plant spectral images with the aim of inferring target phenotypes non-destructively. However, large volumes of data that result from HSI and corequisite specialized methods for analysis may prevent plant scientists from taking full advantage of these systems. Here, we explore estimation of physiological traits in 23 rice accessions using an automated HSI system. Under contrasting nitrogen conditions, HSI data are used to classify treatment groups with [≥] 83% accuracy by utilizing support vector machines. Out of the 14 physiological traits collected, leaf-level nitrogen content (N, %) and carbon to nitrogen ratio (C:N) could also be predicted from the hyperspectral imaging data with normalized root mean square error of predictions smaller than 14% (R2 of 0.88 for N and 0.75 for C:N). This study demonstrates the potential of using an automated HSI system to analyze genotypic variation for physiological traits in a diverse panel of rice; to help lower barriers of application of hyperspectral imaging in the greater plant science research community, analysis scripts used in this study are carefully documented and made publicly available. HIGHLIGHTData from an automated hyperspectral imaging system are used to classify nitrogen treatment and predict leaf-level nitrogen content and carbon to nitrogen ratio during vegetative growth in rice.

plant biology↗

The Toxin Cercosporin is a Virulence Factor for Infection of Coffee by Cercospora coffeicola

Brown eye spot, caused by Cercospora coffeicola, causes significant losses in both quality and quantity of coffee production. As many Cercospora spp. produce the photoactivated toxin cercosporin, this study aimed to determine the role of cercosporin in C. coffeicola pathogenesis by creating disruption mutants unable to produce the toxin. Six C. coffeicola isolates from Brazilian fields, representing organic and conventional production systems in the Minas Gerais state, were evaluated for their ability to produce cercosporin in vitro. Toxin production varied among isolates, ranging from 3.5 - 25.3 {micro}M/ 5 mm mycelial plug; production was undetectable in one isolate. The C. coffeicola homolog of the polyketide synthase gene (CTB1) involved in cercosporin production was amplified using a degenerate primer strategy. The 7044 nt ccCTB1 gene sequence was 90.3% identical to the cnCTB1 gene in Cercospora nicotianae and encoded a putative protein of 2196 amino acids with 98.2% similarity and 97.5% identity to its counterpart in C. nicotianae. Transformation of two isolates of C. coffeicola with a CTB1 disruption construct resulted in the recovery of six ctb1 disruption mutants. All of the ctb1 disruptants were deficient in cercosporin production. Disruption mutants did not differ significantly from the wild type for either growth or sporulation, but were significantly altered in virulence on coffee. As compared to wild type, time to lesion development was significantly increased and numbers of lesions were significantly decreased in coffee plants inoculated with ctb1 disruption mutants. These results show that cercosporin toxin is a virulence factor for C. coffeicola infection of coffee.

plant biology↗