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Quiroga, M.

Publications and source records attributed to Quiroga, M..

2 recordsLinked to original sources

A standard area diagram for potato common scab: comparable performance of image- and object-based validation

Potato common scab (Streptomyces sp.) is an economically important disease that reduces the quality and market value of tubers. A key aspect in developing management strategies involves accurately quantifying the disease. Due to the three-dimensional nature of the tuber and the heterogeneous distribution of lesions across its surface, visual estimates of severity can be challenging. Therefore, the objectives of this study were to develop and validate a standard area diagram (SAD) for estimating common scab severity on potato tubers and to compare validation outcomes obtained using real tubers and digital images. A SAD comprising six severity levels (from 1.3 to 66.8%) was developed based on image analysis of naturally infected tubers. Validation was conducted using two complementary approaches in which inexperienced raters evaluated either real potato tubers or digital images of the same tubers under unaided and aided conditions. Accuracy, bias components, and inter-rater reliability were quantified using absolute error metrics, Lins concordance correlation coefficient, intraclass correlation coefficients, and overall concordance correlation coefficients. Use of the SAD significantly improved accuracy, reduced systematic bias, and increased inter-rater reliability across both validation approaches. No significant differences were detected between assessments conducted on real tubers and images, although image-based evaluations showed a slight, non-significant tendency toward reduced scale and location bias under aided conditions. These results demonstrate that a dimension-aware SAD integrating information across the full tuber surface enhances the reliability and reproducibility of visual severity assessments and supports the use of image-based evaluations for training, large-scale surveys, and remote or collaborative applications involving three-dimensional plant organs.

plant biology↗

Hakai links m6A RNA methylation to immune regulation in colorectal cancer

BackgroundThe mA modification is the most abundant RNA epigenetic mark in colorectal cancer (CRC). In this study, we focused on Hakai, a methyltransferase writer-associated protein whose molecular function within the complex and link to CRC immune regulation remain poorly characterized. MethodsWe performed RNA-seq to assess transcriptomic changes after Hakai silencing in CRC models and MeRIP-seq to profile methylation alterations. Validation was carried out by Western blot, flow cytometry, ELISA, and RT-qPCR. Protein interactions within the writer complex were analysed by co-immunoprecipitation, and changes in protein localization by cell fractionation assays. Peripheral blood from healthy donors and lamina propria mononuclear cells from CRC patients were incubated with supernatants from Hakai-silenced CRC cells to evaluate effects on immune responses. ResultsHakai silencing induced phenotypic changes in both monolayer and 3D CRC cultures, while its impact on the global transcriptome was limited. However, significant alterations in the methylation of immune response-related genes and reduced total mA levels were observed. Hakai interacted with the writer-associated protein VIRMA, and its silencing altered the subcellular localization of METTL3. Moreover, conditioned media from Hakai-silenced CRC cells modulated the expression of immune response markers in patient-derived gut immune cells. ConclusionsHakai acts as a component of the mA writer complex in CRC cells, influencing RNA methylation and the expression of immune-related genes. These findings suggest that Hakai silencing may enhance antitumour immune activity and represent a potential strategy to boost cancer immunity in colorectal cancer.

cancer biology↗