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Peinado, M. A.

Publications and source records attributed to Peinado, M. A..

2 recordsLinked to original sources

Frequency-dependent diffusion tensor distribution imaging in the evaluation of ischemic stroke

Non-invasive MRI is widely used to assess and monitor ischemic stroke, yet conventional approaches often lack sensitivity to subtle microstructural changes and struggle to evaluate tissue viability across lesion, penumbra, and distal regions. In this study, frequency dependent diffusion tensor distribution imaging ({omega}DTD) was combined with clustering of diffusion tensor distributions D({omega}) and multivariate regression modeling to characterize ischemic tissue alterations in a whole brain section. Ex vivo {omega}DTD and histology were performed in rats subjected to middle cerebral artery occlusion (MCAO) or sham surgery (P = 17) 24 hours after reperfusion. Lesions showed cell loss and an increased presence of smaller, likely glial, cells. A random forest (RF) model was used to explain and predict histological parameters from diffusion tensor imaging (DTI), manually bin resolved {omega}DTD features, and cluster resolved {omega}DTD parameters. Model performance was evaluated using leave one animal out cross validation (LOO CV). {omega}DTD features better represented cell number than DTI metrics ({omega}DTD R2 = 0.73 vs. DTI R2 = 0.49), with similar advantages for nuclear area and circularity ({omega}DTD R2 = 0.64 and 0.61 vs. DTI R2 = 0.40 and 0.35). The RF model further proved beneficial in capturing complex, nonlinear relationships between MRI parameters and tissue characteristics. Overall, these results indicate that {omega}DTD provides richer microstructural information than standard DTI, and that combining {omega}DTD with advanced machine learning methods enhances interpretation of ischemic tissue damage.

neuroscience↗

Modular dynamics of DNA co-methylation networks exposes the functional organization of colon cancer cells’ genome

Epigenomic plasticity is interconnected with chromatin structure and gene regulation. In tumor progression, orchestrated remodeling of genome organization accompanies the acquisition of malignant properties. DNA methylation, a key epigenetic mark extensively altered in cancer, is also linked to genome architecture and function. Based on this association, we postulate that the dissection of long-range co-methylation structure unveils cancer cells genome architecture remodeling. We applied network-modeling of DNA methylation co-variation in two colon cancer cohorts and found abundant and consistent transchromosomal structures in both normal and tumor tissue. Normal-tumor comparison indicated substantial remodeling of the epigenome covariation and revealed novel genomic compartments with a unique signature of DNA methylation rank inversion.

genomics↗