Biology subjects

Miranda, D.

Publications and source records attributed to Miranda, D..

4 recordsLinked to original sources

bioRxiv2024

Lentivirus Transduced T Cell Lines Response to Pro-inflammatory and Antiviral Cytokines in the Presence of HIV

Various studies have attempted to understand HIV infection under a diverse range of stimulants including cytokine stimulation. Pro-inflammatory cytokines, such as TNF-, have been shown to reactivate HIV latency by inducing NF-{kappa}B mediated activation of the HIV LTR (long terminal repeats) that contain {kappa}B transcriptional binding sites. Interferon-alpha (IFN-), an anti-viral cytokine, is not well studied as an inducer of HIV activation. However, previous work from our group has shown that HIV can block IFN- signaling in CD4+ T cells presumably to allow for further viral replication. Initially using HEK 293T cells, we moved to CD4+ T cells lines to develop a system to determine how stimulation with different cytokines impacts signaling within T cell lines. We confirmed that in our system TNF- triggers activation of NF-{kappa}B driven reporters but not in the presence of HIV. In addition, we show that the presence of HIV blocks IFN- signaling. Taken together, our system demonstrates that HIV by TNF-, will continue to block IFN- signaling preventing it from impacting HIV activation. This system can now be used to screen for cytokine based and other molecule activators that may be influenced by the presence of HIV.

immunology↗

bioRxiv2024

A Viral-Encoded Homologue of IPS-1 Modulates Innate Immune Signaling During KSHV Lytic Replication

Modulation of innate immunity is critical for virus persistence in a host. In particular, viral-encoded disruption of type I interferon, a major antiviral cytokine induced to fight viral infection, is a key component in the repertoire of viral pathogenicity genes. We have identified a previously undescribed open reading frame within the Kaposis sarcoma-associated herpesvirus (KSHV) genome that encodes a homologue of the human IPS-1 (also referred to as MAVS) protein that we have termed viral-IPS-1 (v-IPS-1). This protein is expressed during the lytic replication program of KSHV, and expression of v-IPS-1 blocks induction of type I interferon upstream of the TRAF3 signaling node including signaling initiated via both the RLR and TLR3/4 signaling axes. This disruption of signaling coincides with destabilization of the cellular innate signaling adaptors IPS-1 and TRIF along with a concatenate stabilization of the TRAF3 protein. Additionally, expression of v-IPS-1 leads to decreased antiviral responses indicating a blot to type I interferon induction during viral infection. Taken together, v-IPS-1 is the first described viral homologue of IPS-1 and this viral protein leads to reprogramming of innate immunity through modulation of type I interferon signaling during KSHV lytic replication.

microbiology↗

bioRxiv2022

Robust hierarchically organized whole-brain patterns of dysconnectivity in schizophrenia spectrum disorders observed after Personalized Intrinsic Network Topography

BackgroundSpatial patterns of brain functional connectivity can vary substantially at the individual level. Applying cortical surface-based approaches with individualized rather than group templates may accelerate the discovery of biological markers related to psychiatric disorders. We investigated cortico-subcortical networks from multi-cohort data in people with schizophrenia spectrum disorders (SSDs) and healthy controls using individualized connectivity profiles. MethodsWe utilized resting state and anatomical MRI data from n=406 participants (n = 203 SSD, n = 203 healthy controls) from four cohorts. For each participant, functional timeseries were extracted from 80 cortical regions of interest, representing 6 intrinsic networks using 1) a volume-based approach 2) a surface-based group atlas approach, and 3) Personalized Intrinsic Network Topography (PINT), a personalized surface-based approach (Dickie et al., 2018). Timeseries were also extracted from previously defined intrinsic network subregions of the striatum (Choi et al 2011), thalamus (Ji et al 2019), and cerebellum (Buckner et al 2011). ResultsCompared to a volume-based approach, the correlations between all cortical networks and the expected subregions of the striatum, cerebellum, and thalamus were increased using a surface-based approach (Cohens D volume vs surface 0.27-1.00, all p<10^-6) and further increased after PINT (Cohens D surface vs PINT 0.18-0.96, all p <10^-4). In SSD vs HC comparisons, controlling for age, sex, scanner and in-scanner motion, we observed robust patterns of dysconnectivity that were strengthened using a surface-based approach and PINT (Number of differing pairwise-correlations: volume: 357, surface: 562, PINT: 630, FDR corrected). These patterns were found from four different cortical networks - frontal-parietal, sensory-motor, visual, and default mode -- to subcortical regions. ConclusionOur results indicate that individualized approaches can more sensitively delineate cortical network dysconnectivity differences in people with SSDs. These robust patterns of dysconnectivity were visibly organized in accordance with the cortical hierarchy, as predicted by computational models (Murray et al 2019). Our results also change our understanding of the specific network-network functional connectivity alterations in people with SSDs, and the extent of those alterations. Future work will examine these new patterns of dysconnectivity with behaviour using dimensional models. Highlights- We evaluated the impact of cortical mapping method (volume-based, surface-based, vs surface personalized: PINT) on resting-state fMRI results in Schizophrenia Spectrum Disorders (SSD). - The use of surface-based approaches and PINT increased the connectivity of cortical networks with the expected subregions of the striatum, thalamus and cerebellum, in comparison to a volume-based approach - whole-brain case-control differences in functional connectivity were more pronounced after surface-based approach and PINT, in comparison to a volume-based approach

neuroscience↗

bioRxiv2018

Synaptic transmission modulates while non-synaptic processes govern the transition from pre-ictal to seizure activity in vitro

It is well established that non-synaptic mechanisms can generate electrographic seizures after blockade of synaptic function. We investigated the interaction of intact synaptic activity with non-synaptic mechanisms in the isolated CA1 region of rat hippocampal slices using the \"elevated-K+\" model of epilepsy. Elevated K+ ictal bursts share waveform features with other models of electrographic seizures, including non-synaptic models where chemical synaptic transmission is suppressed, such as the low-Ca2+model. These features include a prolonged (several seconds) negative field shift associated with neuronal depolarization and superimposed population spikes. When population spikes are disrupted for up to several seconds, intracellular recording demonstrated that the prolonged suppression of population spikes during ictal activity was due to depolarization block of neurons. Elevated-K+ ictal bursts were often preceded by a build-up of \"pre-ictal\" epileptiform discharges that were characterized as either \"slow-transition\" (localized and with a gradual increase in population spike amplitude, reminiscent non-synaptic neuronal aggregate formation, presumed mediated by extracellular K+ concentrations ([K+])o accumulation), or \"fast-transition\" (with a sudden increase in population spike amplitude, presumed mediated by field effects). When ictal activity had a fast-transition it was preceded by fast-transition pre-ictal activity; otherwise population spikes developed gradually at ictal event onset. Addition of bicuculline, a GABAA receptor antagonist, suppressed population spike generation during ictal activity, reduced pre-ictal activity, and increased the frequency of ictal discharges. Nipecotic acid and NNC-711, both of which block GABA re-uptake, increased population spike amplitude during ictal bursts and promoted the generation of preictal activity. By contrast, addition of ionotropic glutamate-receptor antagonists (NBQX, D-APV) had no consistent effect on ictal burst waveform or frequency and did not fully suppress pre-ictal activity. Similarly, CGP 55848, a GABAB receptor antagonist, has no significant effect on pre-ictal activity or burst frequency (although it did increase burst duration slightly). Our results are consistent with the hypothesis that non-synaptic mechanisms underpin the generation of ictal bursts in CA1 and that GABAA synaptic mechanisms can shape event development by delaying event initiation and counteracting depolarization block.

neuroscience↗