Search bioRxiv⌕ Search

Biology subjects

Metras, R.

Publications and source records attributed to Metras, R..

8 recordsLinked to original sources

Impacts of disease surveillance frequency on understanding and controlling Rift Valley fever virus

Effective livestock disease surveillance faces numerous socio-economic and disease-specific challenges, particularly within resource-limited settings. Rift Valley fever (RVF), a zoonotic vector-borne disease which is of growing threat to human and veterinary health, exemplifies these challenges, consequently leading to irregular or infrequent surveillance. While mathematical models frequently utilise these surveillance data to understand disease dynamics and assess the effectiveness of disease control measures, the impact of surveillance frequency on these model-based assessments is not clear. To address this, we used a livestock RVF virus infection model, which incorporates spatial and age structures, livestock movement, and environmental factors. We then generated synthetic cross-sectional seroprevalence surveys with varying frequencies from outbreak scenarios inferred from empirical serological data from the Comoros archipelago. By refitting the model to these synthetic data, we found that lower surveillance frequency was associated with increased uncertainties in understanding disease biology, inferring past outbreak timing, predicting future outbreak size, and recommending optimal control measures. In particular, once serological surveillance was less frequent than annually, the ability to distinguish spatio-temporal patterns of disease transmission and forecast trends diminished. These findings emphasise the need for adequately frequent surveillance data to ensure robust model-based analyses which inform effective preparedness and control strategies for livestock diseases within resource-limited settings. Author summaryDisease surveillance underpins mathematical models that are used to understand the emergence, spread and persistence of disease, and assess and compare the impacts of disease control measures. However, regular surveillance is a particular challenge for livestock diseases in resource-limited settings, such as those affected by Rift Valley fever. Here, our work provides an illustrative example of how surveillance frequency impacts our ability to understand disease outbreaks and to decide which control measures are most effective at combatting disease, using outbreak scenarios for Rift Valley fever in the Comoros archipelago. By simulating from a mathematical model informed by different surveillance frequencies, we found that less frequent surveillance was associated with greater uncertainty in model predictions, and demonstrated that this may distort epidemiological understanding and future control recommendations of a disease. Our work has crucial implications for animal health decision-making, highlighting the importance of consistent and frequent surveillance to improve disease management and prioritise disease control measures.

ecology↗

Spatial pattern of serology against Borrelia and tick-borne encephalitis virus in roe deer (Capreolus capreolus), Northern France, 2019-2022

BackgroundLyme borreliosis and tick-borne encephalitis (TBE) are tick-borne zoonoses of public health importance, transmitted in Western Europe by the same tick vector Ixodes ricinus. Roe deer (Capreolus capreolus) is a widespread feeding host for I. ricinus stages. Here, we explored the spatial extent of both pathogens in the wild in Northern France by assessing serological status in roe deer. MethodsWe collected 3,147 blood samples (2019-2022), and searched antibodies against both pathogens using ELISA tests. We fitted logistic models to investigate exposure to both or either pathogens, and explored spatial patterns using Kulldorf clustering scan tests. ResultsThe overall ELISA IgG prevalence was 23.24% (95%CI [21.77-34.72]) for Borrelia and 8.64% (95%CI [7.45-9.86]) for TBEV. The median Borrelia seroprevalence varied from 4% to 42% between departments, with two high-risk clusters of exposure identified. TBEV seroprevalence did not show any spatial pattern, and positives by seroneutralisation tests were reported in eight departments. DiscussionOur findings suggest the presence of both pathogens over large areas. Wider spatial sampling including areas at lower risk and improved serological methods would be beneficial to further validate those estimates.

ecology↗

Effectiveness and equity of vaccination strategies against Rift Valley fever in a heterogeneous landscape

Spatio-temporal variations in environment and socio-agricultural factors create heterogeneity in livestock disease transmission risk, raising challenges in identifying populations most at risk and how this risk changes over time. Consequently, prioritising control strategies, such as vaccination, to achieve optimal or equitable outcomes across regions impedes the design of an effective vaccination strategy. We developed a metapopulation model for Rift Valley fever transmission in livestock across the Comoros archipelago which incorporates livestock vaccination in addition to heterogeneity in viral transmission rates and animal movements. We used the model to evaluate three vaccine allocation strategies-proportional allocation, optimal allocation for maximising total infections averted across the archipelago, and optimal allocation for more equitable outcomes across islands--under different vaccination coverage levels and animal identification scenarios. We report that (i) both archipelago-wide and island-specific strategy effectiveness were impacted by vaccination rate, allocation strategy, and animal identification approach, (ii) optimally allocating vaccines improved strategy effectiveness compared with proportional allocation but resulted in inequitable outcomes between islands, and (iii) tagging animals post-vaccination boosted overall strategy effectiveness for all vaccination rates.

ecology↗

Drivers of Ixodes ricinus population dynamics in Northeast France: a Bayesian modelling approach

Ixodes ricinus is the primary vector for Lyme disease and tick-borne encephalitis across Europe. Despite playing a critical role in disease transmission dynamics, the environmental drivers of its complex life cycle have not been quantified using real-world data. To address this gap, we fitted a unique mechanistic model to a detailed 10-years longitudinal dataset from four sites in Northern France, where I. ricinus is abundant and Lyme disease and tick-borne encephalitis have been reported for decades, within a Bayesian framework. By incorporating key demographic processes and the influence of environmental conditions on these processes, our model estimated oviposition, hatching, and moulting rates across a range of temperature or saturation deficit, as well as questing and vertebrate host contact rates. Notably, moulting peaked at 14.2{degrees}C (95%HDI: 12.5-16.1{degrees}C), substantially lower than commonly suggested by laboratory-based studies, whereas oviposition and hatching peaked at 24.4{degrees}C (95%HDI: 10.9- 27.2{degrees}C) and 24.7{degrees}C (95%HDI: 17.8-27.2{degrees}C), respectively. Furthermore, vertebrate host contact rates significantly varied between the four study sites, with one site presenting up to 2.90 (95%HDI: 2.15-3.86) times higher contact rates than the other three sites. Additionally, we showed the importance of diapause in reproducing the observed seasonal population dynamics. For ticks overwintering through diapause, moulting in spring more accurately matched the predominantly unimodal questing activity patterns observed, compared to moulting in summer. Finally, model projections under several climate change scenarios indicated decreasing tick abundance trends over the next two decades. This study provides a foundation for models of I. ricinus-borne pathogen transmission and can be adapted to other Ixodidae populations of public health significance.

ecology↗

Tick-borne zoonotic flaviviruses and Borrelia infections in wildlife hosts: what have field studies contributed?

Tick-borne flaviviruses and Borrelia spp. are globally spread pathogens of zoonotic potential that are maintained by a transmission cycle at the interface between ticks and vertebrate hosts, mainly wild animals. Aside data on pathogen burden in ticks, information on the status of various hosts relative to infection could be critical. We reviewed how those infections have been studied in wildlife species in the field to discuss how collected data provided relevant epidemiological information and identify needs for further studies. The literature was screened for populational studies on direct or antibody detection for tick-borne Borrelia spp. and flaviviruses in animals, in the wild. Overall, Borrelia spp. were more studied (73% of case studies, representing 297 host species) than flaviviruses (27% of case studies, representing 114 host species). Studies on both Borrelia spp. and flaviviruses focused mainly on the same species, namely bank vole and yellow-necked mouse. Most studies were order-specific and cross-sectional, reporting prevalence at various locations, but with little insight into the underlying epidemiological dynamics. Species with potential to act as reservoir hosts were overlooked, notably passerine birds. We highlight the necessity of collecting both demographics and infection data in wildlife studies, and to consider communities of species, to better estimate zoonotic risk potential in the One Health context.

ecology↗

Heterogeneity of Rift Valley fever virus transmission potential across livestock hosts, quantified through a model-based analysis of host viral load and vector infection

Rift Valley fever (RVF) is a viral, vector-borne, zoonotic disease. The relative contributions of livestock species to RVFV transmission has not been previously quantified. To estimate their potential to transmit the virus over the course of their infection, we 1) fitted a within-host model to viral RNA and infectious virus measures, obtained daily from infected lambs, calves, and young goats, 2) estimated the relationship between vertebrate host infectious titers and probability to infect mosquitoes, and 3) estimated the net infectiousness of each host species over the duration of their infectious periods, taking into account different survival outcomes for lambs. Our results indicate that the efficiency of viral replication, along with the lifespan of infectious particles, could be sources of heterogeneity between hosts. For similar infectious titers, we found that infection rates in Aedes spp. vectors were significantly higher than in Culex spp. vectors. Consequently, for Aedes infections, we estimated the net infectiousness of lambs to be 2.93 (median) and 3.65 times higher than that of calves and goats, respectively. Among lambs, individuals which eventually died from the infection were 1.93 times more infectious than lambs recovering. Beyond infectiousness, the relative contributions of host species to transmission depend on local ecological factors, including relative abundances and vector host-feeding preferences. Quantifying these contributions will ultimately help design efficient, targeted, surveillance and vaccination strategies.

systems biology↗

Drivers of Rift Valley fever virus persistence and the impact of control measures in a spatially heterogeneous landscape: the case of the Comoros archipelago, 2004-2015

Rift Valley fever (RVF) is one of the many zoonotic arboviral haemorrhagic fevers present in Africa. The ability of the pathogen to persist in multiple geographically distinct regions has raised concerns about its potential for spread to and persistence within currently disease-free areas. However, the mechanisms for which RVF virus persistence occurs at both local and broader geographical scales have yet to be fully understood and rigorously quantified. Here, we developed a mathematical metapopulation model describing RVF virus transmission in livestock across the four islands of the Comoros archipelago and fitted this model in a Bayesian framework to surveillance data conducted in livestock across those islands between 2004 and 2015. In doing so, we estimated the importance of island-specific environmental factors and animal movements between those islands on the persistence of RVF virus in the archipelago, and we further tested the impact of different control scenarios on reducing disease burden. We demonstrated that the archipelago network was able to sustain viral transmission over 10 years after assuming only one introduction event during early 2007. Movement restrictions were only useful to control the disease in Anjouan and Mayotte, as Grande Comore and Moheli were able to self-sustain RVF viral persistence, probably due to local environmental conditions that are more favourable for vectors. We also evidenced that repeated outbreaks during 2004-2020 may have gone under-detected by local surveillance in Grande Comore and Moheli. Strengthened longterm and coordinated surveillance would enable the detection of viral re-emergence and evaluation of different relevant vaccination programmes.

ecology↗

Mechanisms for European Bat Lyssavirus subtype 1 persistence in non-synanthropic bats: insights from a modeling study

BackgroundLyssaviruses are pathogens of bat origin of considerable zoonotic concern being the causative agent for rabies disease, however our understanding of their persistence in bat populations remains very scarce.\n\nMethodsLeveraging existing data from an extensive ecological field survey characterizing Myotis myotis and Miniopterus schreibersii bat species in the Catalonia region, we develop a data-driven spatially explicit metapopulation model to identify the mechanisms of the empirically observed persistence of European Bat Lyssavirus subtype 1 (EBLV-1), the most common lyssavirus species found in Europe. We consider different disease progressions accounting for lethal infection, immunity waning, and potential cross-species transmission when the two populations share the same refuge along the migratory path of M. schreibersii.\n\nResultsWe find that EBLV-1 persistence relies on host spatial structure through the migratory nature of M. schreibersii bats, on cross-species mixing with M. myotis population, and on a disease progression leading to survival of infected animals followed by temporary immunity. The higher fragmentation along the northern portion of the migratory path is necessary to maintain EBLV-1 sustained circulation in both species, whereas persistence would not be ensured in the single colony of M. myotis. Our study provides first estimates for the EBLV-1 transmission potential in M. schreibersii bats and average duration of immunity in the host species, yielding values compatible with previous empirical observations in M. myotis bats.\n\nConclusionsHabitats sharing and the strong spatial component of EBLV-1 transmission dynamics identified as key drivers in this ecological context may help understanding the observed spatial diffusion of the virus at a larger scale and across a diverse range of host species, through long-range migration and seeding of local populations. Our approach can be readily adapted to other zoonotic pathogens of public health concern.

epidemiology↗