Biology subjects

Leppert, I. R.

Publications and source records attributed to Leppert, I. R..

12 recordsLinked to original sources

bioRxiv2026

The Canadian Pediatric Imaging Platform (C-PIP) Reference Sample: Neuroimaging Protocol and Cross-site Validation for Harmonized Multimodal Pediatric Imaging

Understanding how the human brain matures from infancy through adolescence is essential for identifying factors that influence health outcomes. Magnetic resonance imaging (MRI) provides powerful tools for characterizing structural, microstructural, functional, and metabolic aspects of brain development; however, many pediatric imaging studies are constrained by small sample sizes, limited geographic diversity, lack of longitudinal measurement, restricted age ranges, and heterogeneous acquisition protocols. While recent large-scale neuroimaging consortia have begun to address these challenges, such resources remain limited in the Canadian context, creating a critical gap. The Canadian Pediatric Imaging Platform (C-PIP) has developed a multisite neuroimaging framework across three of Canada's largest pediatric hospitals: Alberta Children's Hospital (Calgary), Centre Hospitalier Universitaire Sainte-Justine (Montreal), and the Hospital for Sick Children (Toronto). These three sites were united through a national initiative, leveraging high-performance MRI systems to accelerate Canadian neurodevelopmental research. In addition, C-PIP has implemented a centralized data sharing infrastructure to facilitate open science and collaborative research across institutions. Here, we describe the development and implementation of a multimodal MRI acquisition protocol designed to support multimodal longitudinal studies of typical and atypical brain development spanning infancy through adolescence. Within-site stability and cross-site stability of C-PIP core MRI sequences were evaluated using a travelling-participant study. The C-PIP MRI protocol establishes a harmonized, multisite imaging framework that supports large-scale investigations of pediatric brain development and disorders.

neuroscience↗

bioRxiv2026

Longitudinal changes in control energy of brain networks in older adults at familial risk for Alzheimers disease

The ability of structural brain networks to control neural dynamics is affected by healthy and pathological aging, including Alzheimers disease (AD). According to network control theory, transitions between functional brain states incur energetic costs. How these costs change longitudinally with aging remains unknown. Here, in 279 older adults at familial risk for AD, control energy increased longitudinally for state maintenance and transitions between sensorimotor and attentional networks, while decreasing for another sensorimotor--attentional transition. Changes in transition costs between higher-order networks were associated with cognitive performance: greater DorsAttn--Executive cost was associated with poorer immediate memory, while lower Executive--Def+Lim cost was associated with poorer attention. Higher plasma p-tau181 was associated with lower DorsAttn--Def+Lim transition cost. These findings reveal transition-specific alterations in the energetic landscape of aging and distinct relationships with cognition and AD pathology. Together, they highlight energetic constraints on brain network reconfiguration as a complementary perspective on neurocognitive aging.

neuroscience↗

bioRxiv2026

White Matter Myelin Shapes Macroscale Functional Connectivity Through Integrative Communication

White matter structural connectivity constrains large-scale brain communication, yet most network models do not account for biologically meaningful differences between connections. Although axonal diameter and myelination influence neural signaling at the microscale, how these features shape systems-level functional connectivity remains unclear. Here, we test whether structural connectomes weighted by white matter microstructure give rise to distinct communication regimes that differentially predict multimodal functional connectivity. Combining quantitative MRI and advanced diffusion modeling, we constructed whole-brain networks weighted by tract caliber and multiple myelin-sensitive measures. To these, we applied routing- and diffusion-based communication models and used the resulting communication metrics to predict haemodynamic and frequency-resolved electromagnetic connectivity. Myelin-weighted networks preferentially enhanced long-range communication efficiency and redistributed spectral energy toward globally integrative topological eigenmodes. In contrast, caliber-weighted networks emphasized mesoscale organization and short-range communication. Across nested regression models controlling for geometric embedding and network topology, myelin-sensitive communication explained unique variance in functional connectivity with effects varying systematically across cortical systems and frequency bands. The strongest coupling was observed for alpha-band connectivity in association and attentional networks, consistent with a role for myelin-dependent communication delays in supporting long-range alpha synchrony. These findings demonstrate how distinct white matter microstructural features give rise to heterogeneous large-scale communication regimes: tract caliber and myelin bias communication toward locally specialized and globally integrative architectures, respectively. By integrating biologically informed connectomics with communication modeling and multimodal functional data, this work advances a mechanistic account of how white matter microstructure shapes macroscale brain dynamics.

neuroscience↗

bioRxiv2026

Coronary artery disease is linked with demyelination and iron deposition in white matter watershed areas

Coronary artery disease increases risk of cognitive decline and stroke and is associated with white matter alterations. However, the biological basis of these changes remains unclear. Myelin content and iron deposition are crucial measures of white matter health and can be measured with quantitative MRI. This study investigated whether myelin and iron alterations occur in coronary artery disease, and their relationship with cognition. In this cross-sectional study, 46 individuals with coronary artery disease and 40 healthy controls aged > 50 years, with normal cognition underwent 3T MRI and cognitive assessments. Quantitative MRI metrics (susceptibility, magnetization transfer saturation, R2* and R1 relaxation rates) were calculated in the border zones between adjacent arterial territories (watershed regions) and in the areas outside these borders (non-watershed regions). Relative to controls, the coronary artery disease group showed lower myelin and higher iron content, as measured by lower magnetization transfer saturation and R1, and higher susceptibility specifically in watershed regions. Importantly, these microstructural alterations were associated with poorer cognitive performance in the coronary artery disease group with lower magnetization transfer and R1related to poorer global cognition and with higher magnetic susceptibility with poorer verbal memory. These findings suggest that coronary artery disease is associated with demyelination and iron deposition in white matter, most prominently in watershed regions, which are known for their susceptibility to stroke. The association of these microstructural alterations with cognition highlights the role of white matter as a key vulnerable region and a promising focus for future mechanistic and therapeutic studies.

neuroscience↗

bioRxiv2025

The role of white matter myelin in structural-functional network coupling

The brain is a complex network of neuronal populations interconnected by white matter tracts. The composition of these white matter connections (SC) shapes inter-regional signaling dynamics giving rise to spatial patterns of synchronous functional connectivity (FC). Several modeling approaches have proven useful for studying the mechanisms underlying the relationship between SC and FC. However, the myelination of white matter tracts -- a major component of white matter connectivity -- is not accounted for by conventional SC networks, and thus, has largely been excluded from models of FC. Here, we expand structure-function brain modeling by integrating a multi-feature white matter SC network. We use multi-modal MRI to compute an SC network with connections (edges) weighted by the caliber, myelination, and length of white matter tracts. We investigate the relationship of this multi-feature SC network with both haemodynamic and electromagnetic FC. Edge myelin was strongly predictive of FC in a pattern that was heterogeneous across brain regions and timescales of neural function. Edge myelin showed strong, frequency-specific interactions with both edge caliber and length suggesting a modulatory role for white matter myelin in structure-function coupling. This was further supported by antagonistic gradients of white matter myelin and structure-function coupling along the sensory-association axis. We describe in detail the individual and joint relationships between these major white matter features and multi-frequency FC. These results illustrate the advantage of a more comprehensive characterization of white matter in structure-function models and establish how white matter myelin -- known for roles in conduction velocity, plasticity, and metabolic support at the microscale -- shapes brain function at the macroscale.

neuroscience↗

bioRxiv2025

A unified imaging-histology framework for superficial white matter architecture studies in the human brain

The superficial white matter (SWM), immediately beneath the cortical mantle, is thought to play a major role in cortico-cortical connectivity as well as large-scale brain function. Yet, this compartment remains rarely studied due to its complex organization. Our objectives were to develop and disseminate a robust computational framework to study SWM organization based on 3D histology and high-field 7T MRI. Using data from the BigBrain and Ahead 3D histology initiatives, we first interrogated variations in cell staining intensities across different cortical regions and different SWM depths. These findings were then translated to in-vivo 7T quantitative myelin-sensitive MRI, including T1 relaxometry (T1 map) and magnetization transfer saturation (MTsat). As indicated by the statistical moments of the SWM intensity profiles, the first 2 mm below the cortico-subcortical boundary were characterized by high structural complexity. We quantified SWM microstructural variation using a non-linear dimensionality reduction method and examined the relationship of the resulting microstructural gradients with indices of cortical geometry, as well as structural and functional connectivity. Our results showed correlations between SWM microstructural gradients, as well as curvature and cortico-cortical functional connectivity. Our study provides novel insights into the organization of SWM in the human brain and underscores the potential of SWM mapping to advance fundamental and applied neuroscience research. HighlightsO_LIDeveloped an anatomy-based open science framework to study SWM organization based on 3D post-mortem histology and/or in-vivo high-field MRI C_LIO_LIThe first 2 mm into the white matter are characterized by high structural complexity C_LIO_LIInter-regional trends in SWM microstructural variation, which related to cortical geometry, as well as cortico-cortical connectivity C_LI

neuroscience↗

bioRxiv2025

Multivariate white matter microstructure alterations in older adults with coronary artery disease

Patients with coronary artery disease (CAD) face an increased risk of cognitive impairment, dementia, and stroke. While white matter (WM) lesions are frequently reported in patients with CAD, the effects on WM microstructure alterations remain largely unknown. We aimed to identify WM microstructural alterations in individuals with CAD compared to healthy controls (HC), and to examine their relationships with cognitive performance. Forty-three (43) patients with CAD and 36 HC aged 50 and older underwent comprehensive neuropsychological testing and multi-modal 3T MRI. A novel multivariate approach - the Mahalanobis distance (D2) - was used to quantify WM abnormalities as the amount of deviation from the HC reference group. D2 integrates multiple MRI-derived diffusion-weighted imaging, R1 relaxometry, and magnetization transfer imaging metrics, while accounting for covariance between metrics. Relationships between WM D2 and cognition (executive function and processing speed) were also assessed. Compared to HCs, patients with CAD had higher D2 values in the whole WM (p=0.009) and in the territories right anterior, bilateral middle, and right posterior cerebral artery territories (p<0.05). Myelin-sensitive metrics, particularly R1 relaxation rate and MT saturation (MTsat), were the most important contributors to D2. Processing speed was positively associated with greater R1 in both the whole WM and left middle cerebral artery territory. These findings suggest that greater WM microstructural alterations observed in patients with CAD were mainly driven by differences in myelin content, as R1 and MTsat were the most important contributors. These alterations may contribute to a heightened risk of cognitive impairment.

neuroscience↗

bioRxiv2024

Mapping the aggregate g-ratio of white matter tracts using multi-modal MRI

The g-ratio of a myelinated axon is defined as the ratio of the inner-to-outer diameter of the myelin sheath and modulates conduction speed of action potentials along axons. This g-ratio can be mapped in vivo at the macroscopic scale across the entire human brain using multi-modal MRI and sampled along white matter streamlines reconstructed from diffusion-weighted images to derive the g-ratio of a white matter tract. This tractometry approach has shown spatiotemporal variations in myelin g-ratio across white matter tracts and networks. However, tractometry is biased by partial volume effects where voxels contain multiple fiber populations. To address this limitation, we used the Convex Optimization Modeling for Microstructure-Informed Tractography (COMMIT) framework to derive tract-specific axonal and myelin volumes, which are used to compute the tract-specific aggregate g-ratio. We compare our novel COMMIT-based tract-specific g-ratio mapping approach to conventional tractometry in a group of 10 healthy adults. Our findings demonstrate that the tract-specific g-ratio mapping approach preserves the overall spatial distribution observed in tractometry and enhances contrast between tracts. Additionally, our scan-rescan data shows high repeatability for medium to large caliber tracts. We show that short and large caliber tracts have a lower g-ratio, whereas tractometry results show the opposite trends. This technique advances tract-specific analysis by reducing biases introduced by the complex network of crossing white matter fibers.

neuroscience↗

bioRxiv2024

Sex and APOE4-specific links between cardiometabolic risk factors and white matter alterations in individuals with a family history of Alzheimer's disease

INTRODUCTIONWhite matter (WM) alterations are among the earliest changes in Alzheimers disease (AD), yet limited work has comprehensively characterized the effects of AD risk factors on WM. METHODSIn older adults with a family history of AD, we investigated the sex-specific and APOE genotype-related relationships between WM microstructure and risk factors. Multiple MRI-derived metrics were integrated using a multivariate approach based on the Mahalanobis distance (D2). The links between WM D2 and cognition were also explored. RESULTSWM D2 in several regions was associated with high systolic blood pressure, BMI, and glycated hemoglobin, and low cholesterol, in both males and females. APOE4+ displayed a distinct risk pattern, with LDL-cholesterol having a detrimental effect only in carriers, and this pattern was linked to immediate memory performance. Myelination was the main mechanism underlying WM alterations. DISCUSSIONOur findings reveal that combined exposure to multiple cardiometabolic risk factors negatively impacts microstructural health, which may subsequently affect cognition. Notably, APOE4 carriers exhibited a different risk pattern, especially in the role of LDL, suggesting distinct underlying mechanisms in this group.

neuroscience↗

bioRxiv2024

Multimodal Precision Neuroimaging of the Individual Human Brain at Ultra-high fields

Multimodal neuroimaging, in particular magnetic resonance imaging (MRI), allows for non-invasive examination of human brain structure and function across multiple scales. Precision neuroimaging builds upon this foundation, enabling the mapping of brain structure, function, and connectivity patterns with high fidelity in single individuals. Highfield MRI, operating at magnetic field strengths of 7 Tesla (T) or higher, increases signal-to-noise ratio and opens up possibilities for gains spatial resolution. Here, we share a multimodal Precision Neuroimaging and Connectomics (PNI) 7T MRI dataset. Ten healthy individuals underwent a comprehensive MRI protocol, including T1 relaxometry, magnetization transfer imaging, T2*-weighted imaging, diffusion MRI, and multi-state functional MRI paradigms, aggregated across three imaging sessions. Alongside anonymized raw MRI data, we release cortex-wide connectomes from different modalities across multiple parcellation scales, and supply "gradients" that compactly characterize spatial patterning of cortical organization. Our precision MRI dataset will advance our understanding of structure-function relationships in the individual human brain and is publicly available via the Open Science Framework.

neuroscience↗

bioRxiv2023

The Human Brain Connectome Weighted by the Myelin Content and Total Intra-Axonal Cross-Sectional Area of White Matter Tracts

A central goal in neuroscience is the development of a comprehensive mapping between structural and functional brain features. Computational models support in vivo investigation of the mechanisms mediating this relationship but currently lack the requisite biological detail. Here, we characterize human structural brain networks weighted by multiple white matter microstructural features to assess their potential joint utilization in computational models. We report edge-weight-dependent spatial distributions, variance, small-worldness, rich club, hubs, as well as relationships with function, edge length and myelin. Contrasting networks weighted by the total intra-axonal cross-sectional area and myelin content of white matter tracts, we find opposite relationships with functional connectivity, an edge-length-independent inverse relationship with each other, and the lack of a canonical rich club in myelin-weighted networks. When controlling for edge length, tractometry-derived networks weighted by either tensor-based metrics or neurite density show no relationship with whole-brain functional connectivity. We conclude that structure-function brain models are likely to be improved by the co-utilization of structural networks weighted by total intra-axonal cross-sectional area and myelin content. We anticipate that the proposed microstructure-weighted computational modeling approach will support mechanistic understanding of the structure-function relationship of the human brain. AUTHOR SUMMARYFor computational network models to provide mechanistic links between brain structure and function, they must be informed by networks in which edge weights quantify structural features relevant to brain function. Here, we characterized several weighted structural networks capturing multiscale features of white matter connectivity. We describe these networks in terms of edge weight distribution, variance and network topology, as well as their relationships with each other, edge length and function. Overall, these findings support the joint use of structural networks weighted by the total intra-axonal cross-sectional area and myelin content of white matter tracts in structure-function models. This thorough characterization serves as a benchmark for future investigations of weighted structural brain networks.

neuroscience↗

bioRxiv2018

Voxel-wise T2 relaxometry of Normal Pediatric Brain Development in 326 healthy infants and toddlers.

Quantitative T2 data from an NIH-sponsored multi-center study of Normal Brain Development was used to perform automatic voxel-wise analysis of the changes in T2 evolution in the brain in healthy children within the age range from birth to 5 years. All data were non-linearly registered into a common coordinate space. The T2 parameters were estimated by 2 point fitting from the PD-weighted and T2-weighted image data, or by least-squares fitting of 4 data points when addition intermediate weighting images were available. The main result of this study is voxel-level map of monoexponential evolution of T2 in this age range indicating the delay (in months) and the rate (in 1/months) of development. The automatic maps are compared to manual region-of-interest based estimates of T2 evolution.

neuroscience↗