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Hernandez, H.

Publications and source records attributed to Hernandez, H..

4 recordsLinked to original sources

A multi-frequency whole-brain neural mass model with homeostatic feedback inhibition

Whole-brain models are valuable tools for understanding brain dynamics in health and disease by enabling the testing of causal mechanisms and identification of therapeutic targets through dynamic simulations. Among these models, biophysically inspired neural mass models have been widely used to simulate electrophysiological recordings, such as MEG and EEG. However, traditional models face limitations, including susceptibility to hyperexcitation, which constrains their ability to capture the full richness of neural dynamics. Here, we developed and characterized a new version of the Jansen-Rit neural mass model aimed at overcoming these limitations. Our model incorporates inhibitory synaptic plasticity (ISP), which adjusts inhibitory feedback onto pyramidal neurons to clamp their firing rates around a target value. Further, the model combined two subpopulations of neural cortical columns oscillating in and {gamma}, respectively, to generate a richer EEG power spectrum. We analyzed how different model parameters modulate oscillatory frequency and connectivity. We considered a models showcase, simultaneously fitting EEG and fMRI recordings during NREM sleep. Bifurcation analysis showed that ISP increases the parameters range in which the model exhibited sustained oscillations; the target firing rate acts as a bifurcation parameter, moving the system across the bifurcation point, producing different oscillatory regimes, from slower to faster. High frequency activity emerged from low global coupling, high firing rates, and a high proportion of {gamma} versus subpopulations. Importantly, ISP was necessary in the multi-frequency model to successfully fit EEG functional connectivity across frequency bands. Finally, ISP-controlled reductions in excitability reproduced both the slow-wave activity and the reduced connectivity in NREM sleep. Altogether, our model is compatible with biological evidence of the effects of E/I balance on modulating brain rhythms and connectivity, as observed in sleep, neurodegeneration, and chemical neuromodulation. This biophysical model with ISP provides a springboard for realistic brain simulations in health and disease. Author SummaryMacroscale brain activity can be captured using techniques like EEG and fMRI. However, the granular or more detailed activity of neurons and neural masses is inaccessible. A solution is the use of whole-brain models, although they are not free from limitations, they can simulate EEG and fMRI recordings from mathematical equations and empirical data. One first limitation in these models is hyperexcitation. When the coupling between brain areas increases, brain areas might become aberrantly hyperexcitable if no compensatory mechanisms are considered. To address this, we introduce a mechanism in the model that dynamically modifies feedback inhibition to compensate for this excitability increase when running simulations. A second limitation is that many models fail to reproduce the spectral richness of EEG signals. EEG recordings reflect interweaving slower and faster rhythms, and some traditional models of EEG fail in capturing the spectral range of electrophysiological recordings. Here, we addressed this by combining two subpopulations of cortical columns within single brain areas, each one oscillating within the and {gamma} bands of EEG. Their combined activity generates EEG oscillations resembling the slower rhythms observed during sleep, and the faster ones triggered by increased attentional load. We ran different types of simulations and analyses to fully characterize our model. We observed that controlling system excitability is necessary to fully capture EEG connectivity and to simultaneously reproduce the EEG power spectrum and fMRI dynamics. Moreover, we showed that reduced/increased brain excitability is the cause of the emergence of the slowest/fastest EEG rhythms. The model can be used to characterize how connectivity and brain dynamics are altered in different types of conditions, such as chemical neuromodulation, drug delivery, altered states of consciousness, and neurodegenerative disorders. Our model is open access, well-documented, and introduced with tutorials, in the way to make it accessible to the whole neuroscience community.

neuroscience↗

Neo-functionalization in Saccharomyces cerevisiae: A Novel Nrg1-Rtg3 chimeric transcriptional modulator is essential to maintain mitochondrial DNA integrity

In Saccharomyces cerevisiae, the transcriptional repressor Nrg1 (Negative Regulator of Glucose-repressed genes) and the b/Zip transcription factor Rtg3 (ReTroGrade regulation) mediate glucose repression and mitochondria to nucleus signaling, respectively. Here we show a novel function for these two proteins, in which alanine promotes the formation of a chimeric Nrg1/Rtg3 regulator that represses the ALT2 gene (encoding an alanine transaminase paralogue of unknown function) expression. A NRG1/NRG2 paralogous pair, resulting from a post-wide genome, small scale duplication event, is extant in the Saccharomyces genus. Neo-functionalization of only one paralogue resulted in Nrg1, able to interact with Rtg3. Either nrg1{Delta} or rtg3{Delta} single mutant strains are unable to utilize ethanol and show a typical petite (small) phenotype on glucose. Neither of the WT genes complemented the petite phenotype, suggesting irreversible mitochondrial DNA damage in these mutants. Neither nrg1{Delta} nor rtg3{Delta} mutant strains express genes encoded by any of five polycistronic units transcribed from mitochondrial DNA in S. cerevisiae. This, and the direct measure of the mitochondrial DNA gene complement confirms that irreversible damage of the mitochondrial DNA occurred in both mutant strains and is consistent with an essential role of the chimeric Nrg1/Rtg3 regulator in mitochondrial DNA maintenance.

microbiology↗

Efficient estimation of time-dependent functional connectivity using Structural Connectivity constraints

Multivariate autoregressive models [MAR] allows estimating effective brain connectivity by considering both power and phase fluctuations of the signals involved. A MAR models brain activity in one region as a linear combination of past activations in all other regions. A Hidden Markov model, HMM, whose states emisions are drawn from state-specific MARs, can then be used to model fast switching of effective brain connectivity over time. However, the large number of MAR parameters, impede the accurate and efficient estimation of such models from neuroimaging timeseries with limited length. We propose a new model for inferring time-dependent effective brain connectivity by using a sparse MAR parameterisation to model the states emisions of a Hidden Semi-Markov Model, HsMM-MAR-AC. The sparse MAR model parameters are restricted by Anatomical Connectivity information in two ways: direct effective connectivity between two regions is only considered if the corresponding structural link/connection exists; and the time-lag associated with each direct connection is computed based on the average fibre length between the two regions, such that only one lag per connection is estimated. We simulated ground truth time-dependent brain connectivity states by generating time-series of 4 to 10 minutes sampled at 5ms, from switching Resting State Networks with a reference structural connectivity, and evaluated the accuracy of the new model in recovering the simulated Brain connectivity States against different levels of connectivity thresholding above and below the reference. We show that even when restricting the MAR to half of the reference connections, the model was able to recover the number of brain states, the associated connectivity features and their dynamics, with as little data as 4 mins. More relaxed structural connectivity thresholds required longer data to estimate the model accurately, and became computationally unfeasible without anatomical restrictions. HsMM-MAR-AC offers an efficient algorithm for estimating time-depend Effective Connectivity (tdEC) from neuroimaging data, that exploits the advantages of MAR without identifiability problems, excessive demand on data collection, or unnecessary computational complexity.

bioinformatics↗

A SARS-CoV-2 spike ferritin nanoparticle vaccine protects against heterologous challenge with B.1.1.7 and B.1.351 virus variants in Syrian golden hamsters

The emergence of SARS-CoV-2 variants of concern (VOC) requires adequate coverage of vaccine protection. We evaluated whether a spike ferritin nanoparticle vaccine (SpFN), adjuvanted with the Army Liposomal Formulation QS21 (ALFQ), conferred protection against the B.1.1.7 and B.1.351 VOCs in Syrian golden hamsters. SpFN-ALFQ was administered as either single or double-vaccination (0 and 4 week) regimens, using a high (10 g) or low (0.2 g) immunogen dose. Animals were intranasally challenged at week 11. Binding antibody responses were comparable between high- and low-dose groups. Neutralizing antibody titers were equivalent against WA1, B.1.1.7, and B.1.351 variants following two high dose two vaccinations. SpFN-ALFQ vaccination protected against SARS-CoV-2-induced disease and viral replication following intranasal B.1.1.7 or B.1.351 challenge, as evidenced by reduced weight loss, lung pathology, and lung and nasal turbinate viral burden. These data support the development of SpFN-ALFQ as a broadly protective, next-generation SARS-CoV-2 vaccine.

immunology↗