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bioRxiv2017

A new genus of horse from Pleistocene North America

The extinct \"New World stilt-legged\", or NWSL, equids constitute a perplexing group of Pleistocene horses endemic to North America. Their slender distal limb bones resemble those of Asiatic asses, such as the Persian onager. Previous palaeogenetic studies, however, have suggested a closer relationship to caballine horses than to Asiatic asses. Here, we report complete mitochondrial and partial nuclear genomes from NWSL equids from across their geographic range. Although multiple NWSL equid species have been named, our palaeogenomic and morphometric analyses support the idea that there was only a single species of middle to late Pleistocene NWSL equid, and demonstrate that it falls outside of crown group Equus. We therefore propose a new genus, Haringtonhippus, for the sole species H. francisci. Our combined genomic and phenomic approach to resolving the systematics of extinct megafauna will allow for an improved understanding of the full extent of the terminal Pleistocene extinction event.

paleontology↗

bioRxiv2017

Three-dimensional mobility and muscle attachments in the pectoral limb of the Triassic cynodont Massetognathus pascuali

The musculoskeletal configuration of the mammalian pectoral limb has been heralded as a key anatomical feature leading to the adaptive radiation of mammals, but limb function in the cynodont outgroup remains unresolved. Conflicting reconstructions of abducted and adducted posture are based on mutually-incompatible interpretations of ambiguous osteology. We reconstruct the pectoral limb of the Triassic non-mammalian cynodont Massetognathus pascuali in three dimensions, by combining skeletal morphology from micro-computed tomography with muscle anatomy from an extended extant phylogenetic bracket. Conservative tests of maximum range of motion suggest a degree of girdle mobility, as well as substantial freedom at the shoulder and the elbow joints. The glenoid fossa supports a neutral pose in which the distal end of the humerus points 45{degrees} posterolaterally from the body wall, intermediate between classically \"sprawling\" and \"parasagittal\" limb postures. Massetognathus is reconstructed as having a near-mammalian complement of shoulder muscles, including an incipient rotator cuff (m. subscapularis, m. infraspinatus, m. supraspinatus, and m. teres minor). Based on close inspection of the morphology of the glenoid fossa, we hypothesize a posture-driven scenario for the evolution of the therian ball-and-socket shoulder joint. The musculoskeletal reconstruction presented here provides the anatomical scaffolding for more detailed examination of locomotor evolution in the precursors to mammals.

paleontology↗

bioRxiv2017

The measurement of species selection on evolving characters

Many processes can contribute to macroevolutionary change. This fact is the source of the wide variety of macroevolutionary change across time and taxa as well as the bane of pale-obiological research trying to understand how macroevolution works. Here, I present a general framework for understanding the variety of macroevolutionary phenomena. Based on Prices theorem, this framework provides a simple quantitative means to understand (1) the macroevolutionary processes that are possible and (2) the way those processes interact with each other. The major qualitative features of macroevolution depend first on the number of processes that co-occur and then on the magnitudes and evolutionary directions of those processes. Species selection, the major macroevolutionary process, consists of patterns of differential rates of speciation and extinction. Its macroevolutionary efficacy depends on the presences of sufficient microevolutionary change. Conversely, microevolutionary change is limited in power by the independent evolution of species, and species selection acting across populations of species can amplify or suppress microevolution. Non-trends may result if species selection sufficiently neutralizes microevolution and may yield stable macroevolutionary patterns over many millions of years.

paleontology↗

bioRxiv2017

History is written by the victors: the effect of the push of the past on the fossil record

Phylogenies may be modelled using \"birth-death\" models for speciation and extinction, but even when a homogeneous rate of diversification is used, survivorship biases can generate remarkable rate heterogeneities through time. One such bias has been termed the \"push of the past\", by which the length of time a clade has survived is conditioned on the rate of diversification that happened to pertain at its origin. This creates the illusion of a secular rate slow-down through time that is, rather, a reversion to the mean. Here we model the controls on the push of the past, and the effect it has on clade origination times, and show that it largely depends on underlying extinction rates. An extra effect increasing early rates of lineage generation is also seen in large clades. These biases are important but relatively neglected influences on many aspects of diversification patterns, such as diversification spikes after mass extinctions and at the origins of clades; they also influence rates of fossilisation, changes in rates of phenotypic evolution and even molecular clocks. These inevitable features of surviving and/or large clades should thus not be generalised to the diversification process as a whole without additional study of small and extinct clades.

paleontology↗

bioRxiv2017

An Early Devonian permineralized rhyniopsid from the Battery Point Formation of Gaspe (Canada)

The Emsian deposits of the Battery Point Formation (GaspeCanada) host the most diverse Early Devonian flora in North America. While most of this diversity has been described from plant compressions, the permineralized component of the flora is incompletely explored. Based on >15 axes studied in serial sections, we describe a new anatomically preserved rhyniopsid from the Battery Point Formation, Eddianna gaspiana gen. & sp. nov.. Eddianna axes are up to 2 mm in diameter and have a well-developed terete xylem strand with potential centrarch maturation (comprising 80% of the cross sectional surface area) that features Sennicaulis-type tracheid wall thickenings. A thin layer interpreted as phloem is preserved around the central xylem and an irregular sclerenchymatous cortex forms longitudinal anastomosing ridges on the outside of the axes. The anatomy of Eddianna axes suggests that they represent lower portions, specialized in efficient water transfer, of a larger plant whose distal regions have yet to be discovered. Eddianna, the first permineralized rhyniopsid described from the Battery Point Formation, is one of only four anatomically preserved plants reported from this unit. These fossils reiterate the potential for additional discoveries of anatomically preserved plants in the Battery Point Formation.

paleontology↗

bioRxiv2019

Diverse genetic origins of medieval steppe nomad conquerors

Over millennia, steppe nomadic tribes raided and sometimes overran settled Eurasian civilizations. Most polities formed by steppe nomads were ephemeral, making it difficult to ascertain their genetic roots or what present-day populations, if any, have descended from them. Exceptionally, the Khazar Khaganate controlled the trade artery between the Black and Caspian Seas in VIII-IX centuries, acting as one of the major conduits between East and West. However, the genetic identity of the ruling elite within the polyglot and polyethnic Khaganate has been a much-debated mystery; a controversial hypothesis posits that post-conversion to Judaism the Khazars gave rise to modern Ashkenazim. We analyzed whole-genome sequences of eight men and one woman buried within the distinctive kurgans of the Khazar upper (warrior) class. After comparing them with reference panels of present-day Eurasian and Iron Age populations, we found that the Khazar political organization relied on a polyethnic elite. It was predominantly descended from Central Asian tribes but incorporated genetic admixture from populations conquered by Khazars. Thus, the Khazar ruling class was likely relatively small and able to maintain a genetic identity distinct from their subjugated populations over the course of centuries. Yet, men of mixed ancestry could also rise into the warrior class, possibly providing troop numbers necessary to maintain control of their large territory. However, when the Khaganate collapsed it left few persistent genetic traces in Europe. Our data confirm the Turkic roots of the Khazars, but also highlight their ethnic diversity and some integration of conquered populations.View Full Text

paleontology↗

bioRxiv2019

A Late Cretaceous Lonchodectid?

A pterosaur ulnar specimen (NZMS CD 467) from the Mangahouanga Stream of New Zealand’s North Island has been first described by Wiffen et al 1988. Assumed to belong to a “Santanadactylus-like” pterosaur, this taxon has not since been extensively described, with only a few tentative claims that it represents an azhdarchid. Here, I re-examine the specimen and compare it to other pterodactyloid taxa, noting peculiar features such as its plug-like (obdurate) ulnar end. Christened Parirau ataroa, this taxon is found to be a lonchodectid, which alongside the North American Navajodactylus boerei extends this clade into the world’s youngest pterosaur faunas.View Full Text

paleontology↗

bioRxiv2020

Computed tomography reveals hip dysplasia in Smilodon: Implications for social behavior in an extinct Pleistocene predator

Reconstructing the behavior of extinct species is challenging, particularly for those with no living analogues. However, damage preserved as paleopathologies on bone can record how an animal moved in life, potentially reflecting behavioral patterns. Here, we assess hypothesized etiologies of pathology in a pelvis and associated right femur of a Smilodon fatalis saber-toothed cat, one of the best-studied species from the Pleistocene-age Rancho La Brea asphalt seeps, California, USA, using visualization by computed tomography (CT). The pelvis exhibits massive destruction of the right hip socket that was interpreted, for nearly a century, to have developed from trauma and infection. CT imaging reveals instead that the pathological distortions characterize chronic remodeling that began at birth and led to degeneration of the joint over the animals life. These results suggest that this individual suffered from hip dysplasia, a congenital condition common in domestic dogs and cats. This individual reached adulthood but could not have hunted properly nor defended territory on its own, likely relying on a social group for feeding and protection. While extant social felids are rare, these fossils and others with similar pathologies are consistent with a spectrum of social strategies in Smilodon supported by a predominance of previous studies.

paleontology↗

bioRxiv2020

Multi-scalar Approaches to the stable isotope ecology of late Quaternary Proboscideans in the Midcontinent

Stable isotopes of mammoths and mastodons have the potential to illuminate ecological changes in late Pleistocene landscapes and megafaunal populations as these species approached extinction. The ecological factors at play in this extinction remain unresolved, but isotopes of bone collagen ({delta}13C, {delta}15N) and tooth enamel ({delta}13C, {delta}18O, 87Sr/86Sr) from the Midwest, USA are leveraged to examine ecological and behavioral changes that occurred during the last interglacial-glacial cycle. Both species had significant C3 contributions to their diets and experienced increasing levels of niche overlap as they approached extinction. A subset of mastodons after the last glacial maximum (LGM) exhibit low {delta}15N values that may represent expansion into a novel ecological niche, perhaps densely occupied by other herbivores. Stable isotopes from serial and micro-sampled enamel show increasing seasonality and decreasing temperatures as mammoths transitioned from Marine Isotope Stage (MIS) 5e to glacial conditions (MIS 4, MIS 3, MIS 2). Isotopic variability in enamel suggests mobility patterns and life histories have potentially large impacts on the interpretation of their stable isotope ecology. This study further refines the ecology of midwestern mammoths and mastodons demonstrating increasing seasonality and niche overlap as they responded to landscape changes in the final millennia before extinction.

paleontology↗

bioRxiv2020

Late Holocene land vertebrate fauna from Cueva de los Nesofontes, Western Cuba: stratigraphy, last appearance dates, diversity and paleoecology

ABSTRACTHere we report a Late Holocene fossil-rich cave deposit from Cueva de los Nesofontes, Mayabeque Province, Cuba. The deposit’s formation and its fauna were studied through a multidisciplinary approach that included stable isotope analyses, radiocarbon chronology, stratigraphy, sedimentology, and taphonomy. Thousands of microvertebrate skeletal remains were recovered, representing a diverse land vertebrate fauna that included threatened and extinct species. The deposit is characterized by profuse Nesophontes remains due to raptor predation. Previously unreported last appearance dates are provided for the extinct island-shrew Nesophontes major, the bats Artibeus anthonyi and Phyllops vetus. Radiocarbon (14C AMS) age estimates between ∼1960 rcyr BP and the present were recovered. The presence of locally extinct species, including the endemic parakeet Psittacara eups, the flicker Colaptes cf. auratus/fernandinae, and the lipotyphlan Solenodon cubanus suggests that these species had broader distributions in the near past. Isotope analyses and faunal composition indicate the previous presence of diverse habitats, including palm grove savannas and mixed woodlands. Isotopes also provide insight into the habitat and coexistence of the extinct bat Artibeus anthonyi and extant A. jamaicensis, the diet of Nesophontes major, and local paleoenvironmental conditions. Oxygen isotopes reveal an excursion suggestive of drier/colder local conditions between 660 and 770 AD. Our research further expands the understanding of Cuban Quaternary extinction episodes and provides data on the distribution and paleoecology of extinct taxa. It supports the conclusion that many Cuban extinct species survived well into the pre-Columbian late Holocene and retained wide distribution ranges until human colonization.View Full Text

paleontology↗

bioRxiv2020

The role of humans on Antillean land vertebrate extinctions: new insights from Cuba

The Caribbean archipelago is a hotspot of biodiversity characterized by a high rate of extinction. Recent studies have examined these losses, but the causes of the Antillean Late Quaternary vertebrate extinctions, and especially the role of humans, are still unclear. Current results provide support for climate-related and human-induced extinctions, but often downplaying other complex bio-ecological factors that are difficult to model or to detect from the fossil and archaeological record. Here, we discuss Caribbean vertebrate extinctions and the potential role of humans derived from new and existing fossil and archaeological data from Cuba. Our results indicate that losses of Cubas native fauna occurred in three waves: one during the late Pleistocene and early Holocene, a second during the middle Holocene, and a third one during the last 2 ka, coinciding with the arrival of agroceramists and the early Europeans. The coexistence of now-extinct species with multiple cultural groups in Cuba for over 4 ka implies that Cuban indigenous non-ceramic cultures exerted far fewer extinction pressures to native fauna than the later agroceramists and Europeans that followed. This suggests a determinant value to increased technological sophistication and demographics as the most plausible effective extinction drivers.

paleontology↗

bioRxiv2020

First report of the bivalves Schedocardia and Acanthocardia (Mollusca, Cardiinae) from Cuba

Herein we provide the first report of the cardiid bivalve Schedocardia from Cuba. The single, partial, valve external mold was derived from the Madruga Formation which is characterized by a richly diverse marine fauna including echinoderms, brachiopods, benthic and planktonic foraminiferans, but from which bivalves were not previously reported. The unit is considered late Paleocene in age (Thanetian), but the presence of Schedocardia supports a possible age extension of the formation into the early Eocene (Ypresian). Moreover, we provide a reconsideration of the historical factors that affected the accepted type locality of the outcrop, which allows for an alternative interpretation of the fauna found therein. RESUMENSe reporta por primera vez el genero bivalvo Schedocardia de la Formacion Madruga, para el registro fosil de Cuba. De esta formacion se ha reportado una rica fauna de invertebrados incluyendo equinodermos, braquiopodos y, especialmente de foraminiferos, pero no moluscos bivalvos. Se ha considerado que la Formacion Madruga se deposito durante el Paleoceno tardio (Thanetiano), no obstante, la presencia de Schedocardia apoya la extension de edad de la formacion hasta el Eoceno temprano (Ypresiano). Ademas, se consideran factores antropogenicos que han afectado la localidad tipo de la formacion.

paleontology↗

bioRxiv2020

The tapejarid pterosaur Tupandactylus imperator from Crato Formation and the preservation of cranial integuments

The group Tapejaridae forms a clade of toothless pterosaurs easily recognized by their premaxillary sagittal crests and particularly large nasoantorbital fenestrae. The tapejarids represent the most representative group of pterosaurs from the Lower Cretaceous Crato Formation of the Araripe Basin (Northeastern Brazil). The holotype of the large tapejarid Tupandactylus imperator Campos and Kellner, 1997 is known by two main slabs from the New Olinda Member of the Crato Formation, however, only one of the slabs containing the sagittally bipartite skull is referred to the holotype of Tupandactylus imperator, remain the counter-slab be properly described. The cotype is fragmented in several broken pieces and presents a significative number of cranial elements. A medial internasal septum completely preserved inside the nasoantorbital fenestra is reported for the first time for pterosaurs. The exceptional preservation of a collagenous septum and other integumentary structures visible in the cotype specimen is extremely rare and supports the concept of the unusual pattern of soft tissue observed in the fossils from the Crato Konservat-Lagerstätte, specially pterosaurs. Herein is presented the description of the cotype of Tupandactylus imperator, in complementation to the previously designated slab of the holotype of this tapejarid species. The occurrence of casques in pterosaurs is supported by comparative anatomy with the bird galliform Pauxi (Cracidae). Besides that, it is discussed on the skull with extravagant cranial crests of Tupandactylus imperator and the significance of the associated soft tissues and other cranial integuments, which indicates an expressive morphological and taxonomic diversity among the tapejarid pterosaurs.View Full Text

paleontology↗

bioRxiv2020

A Cretaceous bug indicates that exaggerated antennae may be a double-edged sword in evolution

In the competition for the opposite sex, sexual selection can favor production of exaggerated features, but the high cost of such features in terms of energy consumption and enemy avoidance makes them go to extinction under the influence of natural selection. However, to our knowledge, fossil on exaggerated traits that are conducive to attracting opposite sex are very rare. Here, we report the exaggerated leaf-like expansion antennae of Magnusantenna wuae Du & Chen gen. et sp. nov. (Hemiptera: Coreidae) with more abundant sensory hairs from a new nymph coreid preserved in a Cretaceous Myanmar amber. The antennae are the largest among species of coreid and one of the largest known insects. Such bizarre antennae indicate that sensitive and delicate sensory system and magnificent appearance in Hemiptera have been already well established in mid-Cretaceous. Our findings provide evidence for Darwins view that sensory organs play an important role in sexual selection. This nymph with the leaf-like antennae may also represents a new camouflage pattern for defense. However, the oversized antennae are costly to develop and maintain, increasing the risks from predators. Such unparalleled expanded antennae might be the key factor for the evolutionary fate of this Myanmar amber coreid species. SignificanceDarwin proposed the importance of sensory organs in sexual selection, but it was greatly ignored compared with weapons and other common ornaments. Here, we report a new type of insect antennae, the multiple segments leaf-like expansion antennae from a new nymph coreid preserved in a Cretaceous Myanmar amber. Our finding provides evidence for the prominent role of sensory organs in sexual selection and thus supports Darwins viewpoint. This discovery demonstrates that high-efficiency antennae were present in Coreidae 99 million years ago. In addition, the exaggerated antennae might represent a new evolutionary innovation for defensive behavior. This is a case in which the high benefits and high costs brought by the exaggerated antennae jointly determine the direction of species evolution.

paleontology↗

bioRxiv2020

Multi-proxy evidence for the impact of the Storegga Slide Tsunami on the early Holocene landscapes of the southern North Sea

Doggerland was a land mass occupying an area currently covered by the North Sea until marine inundation took place during the mid-Holocene, ultimately separating the British land mass from the rest of Europe. The Storegga Slide, which triggered a tsunami reflected in sediment deposits in the Northern North Sea, North East coastlines of the British Isles and across the North Atlantic, was a major event during this transgressive phase. The spatial extent of the Storegga tsunami however remains unconfirmed because to date no direct evidence for the event has been recovered from the southern North Sea. We present evidence that Storegga associated deposits occur in the southern North Sea. Palaeo-river systems have been identified using seismic survey in the southwestern North Sea and sedimentary cores extracted to track the Mid Holocene inundation. At the head of one palaeo-river system near the Outer Dowsing Deep, the Southern River, we observed an abrupt and catastrophic inundation stratum. Based on lithostratigraphic, macro and microfossils and sedimentary ancient DNA (sedaDNA) evidence, supported by optical stimulation luminescence (OSL) and radiocarbon dating, we conclude these deposits were a result of the Storegga event. Seismic identification of this stratum to adjacent cores indicated diminished traces of the tsunami, largely removed by subsequent erosional processes. Our results demonstrate the catastrophic impact of Storegga within this area of the Southern North Sea, but indicate that these effects were temporary and likely localized and mitigated by the dense woodland and topography of the area. We conclude clear physical remnants of the wave are likely to be restricted to inland basins and incised river valley systems.

paleontology↗

bioRxiv2020

A way to break bones? The weight of intuitiveness

During the Middle Paleolithic period, bone marrow extraction was an essential source of fat nutrients for hunter-gatherers especially throughout cold and dry seasons. This is attested by the recurrent findings of percussion marks in osteological material from anthropized archaeological levels. Among them some showed indicators that the marrow extraction process was part of a butchery cultural practice, meaning that the inflicted fracturing gestures and techniques were recurrent, standardized and counter-intuitive i.e. culturally influenced. In order to assess the weight of the counter-intuitive factor in the percussion mark pattern distribution, we carried out an experiment that by contrast focuses on the intuitive approach of fracturing bones to extract marrow, involving individual without experience in this activity. We wanted to evaluate the influence of bone morphology and the individuals behaviour on the distribution of percussion marks. Twelve experimenters broke 120 limb bones, a series of 10 bones per individual. During the experiment, information concerning the fracture of the bones as well as individual behaviour was collected and was subsequently compared to data from the laboratory study of the remains. Then, we applied an innovative GIS (Geographic Information System) method to analyze the distribution of percussion marks to highlight recurrent patterns. Results show that in spite of all the variables there is a high similarity in the distribution of percussion marks which we consider as intuitive patterns. The factor influenced the distribution for the humerus, radius-ulna and tibia series is the bone morphology, while for the femur series individual behaviour seems to have more weight in the distribution. To go further in the subject we need to compare the intuitive models with the distributions of percussion marks registered in fossil assemblages. Thus, it would be possible to propose new hypotheses on butchering practices based on the results presented in this work.

paleontology↗

bioRxiv2020

Powered flight potential approached by wide range of close avian relatives but achieved selectively

Evolution of birds from non-flying theropod dinosaurs is a classic evolutionary transition, but a deeper understanding of early flight has been frustrated by disagreement on the relationships between birds (Avialae) and their closest theropod relatives. We address this through a larger, more resolved evolutionary hypothesis produced by a novel automated analysis pipeline tailored for large morphological datasets. We corroborate the grouping of dromaeosaurids + troodontids (Deinonychosauria) as the sister taxon to birds (Paraves), as well as the recovery of Anchiornithidae as basalmost avialans. Using these phylogenetic results and available data for vaned feathered paravians, maximum and minimum estimates of wing loading and specific lift calculated using ancestral state reconstruction analysis are used as proxies for the potential for powered flight through this transition. We found a broad range of paravian ancestors with estimates approaching values that are indicative of powered flight potential. This suggests that prior to the evolution of flight there was a wider extent of experimentation with wing-assisted locomotion among paravians than previously appreciated. We recovered wing loading and specific lift estimates indicating the potential for powered flight among fossil birds as well as unenlagiine and microraptorine dromaeosaurids. In the context of our phylogeny and of Mesozoic palaeogeography, our results suggest that the potential for powered flight originated three or more times from a broad range of ancestors already nearing this potential, providing a well-supported scenario for the origin of theropod flight to further explore.

paleontology↗

bioRxiv2020

Greenhouse conditions in Lower Eocene coastal wetlands? - Lessons from Schöningen, Northern Germany

The Paleogene succession of the Helmstedt Lignite Mining District in Northern Germany includes coastal peat mire records from the latest Paleocene to the middle Eocene at the southern edge of the Proto-North Sea. Therefore, it covers the different long- and short-term climate perturbations of the Paleogene greenhouse. 56 samples from three individual sections of a lower Eocene seam in the record capture the typical succession of the vegetation in a coastal wetland during a period that was not affected by climate perturbation. This allows facies-dependent vegetational changes to be distinguished from those that were climate induced. Cluster analyses and NMDS of well-preserved palynomorph assemblages reveal four successional stages in the vegetation during peat accumulation: (1) a coastal vegetation, (2) an initial mire, (3) a transitional mire, and (4) a terminal mire. Biodiversity measures show that plant diversity decreased significantly in the successive stages. The highly diverse vegetation at the coast and in the adjacent initial mire was replaced by low diversity communities adapted to wet acidic environments and nutrient deficiency. The palynomorph assemblages are dominated by elements such as Alnus (Betulaceae) or Sphagnum (Sphagnaceae). Typical tropical elements which are characteristic for the middle Eocene part of the succession are missing. This indicates that a more warm-temperate climate prevailed in northwestern Germany during the early lower Eocene.

paleontology↗