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Effects Of Small-Scale Clustering Of Flowers On Pollinator Foraging Behaviour And Flower Visitation Rate

Plants often grow in clusters of various sizes and have a variable number of flowers per inflorescence. This small-scale spatial clustering affects insect foraging strategies and plant reproductive success. In our study, we aimed to determine how visitation rate and foraging behaviour of pollinators depend on the number of flowers per plant and on the size of clusters of multiple plants using Dracocephalum moldavica (Lamiaceae) as a target species. We measured flower visitation rate by observations of insects visiting single plants and clusters of plants with different numbers of flowers. Detailed data on foraging behaviour within clusters of different sizes were gathered for honeybees, Apis mellifera, the most abundant visitor of Dracocephalum in the experiments. We found that the total number of flower visitors increased with the increasing number of flowers on individual plants and in larger clusters, but less then proportionally. Although individual honeybees visited more flowers in larger clusters, they visited a smaller proportion of flowers, as has been previously observed. Consequently, visitation rate per flower and unit time peaked in clusters with an intermediate number of flowers. These patterns do not conform to expectations based on optimal foraging theory and the ideal free distribution model. We attribute this discrepancy to incomplete information about the distribution of resources. Detailed observations and video recordings of individual honeybees also showed that the number of flowers had no effect on handling time of flowers by honeybees. We evaluated the implications of these patterns for insect foraging biology and plant reproduction.

ecology↗

Mating-compatibility genes employed as diagnostic markers to identify novel incursions of the myrtle rust pathogen Austropuccinia psidii

Austropuccinia psidii is the causal agent of myrtle rust in over 480 species within the family Myrtaceae. Lineages of A. psidii are structured by host in its native range, and some have success on new-encounter hosts. For example, the pandemic biotype has spread beyond South America, and proliferation of other lineages is an additional risk to biodiversity and industries. Efforts to manage A. psidii incursions, including lineage differentiation, relies on variable microsatellite markers. Testing these markers is time-consuming and complex, particularly on a large scale. We designed a novel diagnostic approach targeting the fungal mating-type HD (homeodomain) transcription factor locus to address these limitations. The HD locus (bW1/2-HD1 and bE1/2-HD2) is highly polymorphic, facilitating clear biological predictions about its inheritance from founding populations. To be considered the same lineage, all four HD alleles must be identical. Our lineage diagnostics relies on PCR amplification of the HD locus in different genotypes of A. psidii followed by amplicon sequencing using Oxford Nanopore Technologies (ONT) and comparative analysis. The lineage-specific assay was validated on four isolates with existing genomes, uncharacterized isolates, and directly from infected leaf material. We reconstructed HD alleles from amplicons and confirmed their sequence identity relative to their reference. Genealogies using HD alleles confirmed the variations at the HD loci among lineages/isolates. Our study establishes a robust diagnostic tool, for differentiating known lineages of A. psidii based biological predictions. This tool holds promise for detecting new pathogen incursions and can be refined for broader applications, including air-sample detection and mixed-isolate infections.

plant biology↗

Regulation of intercellular TARGET OF MONOPTEROS 7 protein transport in the Arabidopsis root

Intercellular communication coordinates hypophysis establishment in the Arabidopsis embryo. Previously, TARGET OF MONOPTEROS 7 (TMO7) was reported to be transported to the hypophysis, the founder cell of the root cap, and RNA suppression experiment implicated its function in embryonic root development. However, it remained unclear what protein properties and mechanisms mediate TMO7 protein transport, and what role the movement plays in development. Here, we report that in the post-embryonic root, TMO7 and its close relatives are transported into the root cap through plasmodesmata in a sequence, but not size dependent manner. We also show that nuclear residence is critical for TMO7 transport, and postulate that modification, potentially phosphorylation, labels TMO7 for transport. Additionally, three novel CRISPR/Cas9-induced tmo7 alleles confirmed a role in hypophysis division, but suggest complex redundancies with close relatives in root formation. Finally, we demonstrate that TMO7 transport is biologically meaningful, as local expression partially restores hypophysis division in a plasmodesmatal protein transport mutant. Our study identifies motifs and amino acids critical for TMO7 protein transport and establishes the importance of TMO7 in hypophysis and root development.\n\nSummary StatementUnique protein motifs, subcellular localization and post-translational modification, rather than protein size regulate plasmodesmatal transport of TMO7 family proteins during Arabidopsis root development.

plant biology↗

The nucleus follows an internal cellular scale during polarized root hair cell development

The root hair cell is a product of asymmetric cell division, which grows in a polar manner, and thus is an attractive model cell type from a cellular biology aspect. Beyond the fundamental cell biology context, the root hair is involved in water and nutrient acquisition, making it important for agronomic applications. Nuclear positioning in the cell is crucial during root hair development. Often, textbooks demonstrate illustrations of the nucleus located at a fixed position from the tip of a root hair or at the very end of a root hair. The fundamental question is whether the nucleus follows a cellular scale during polarized growth. Maintaining the scale is a rudimentary biological process during development at the organismal and cellular levels. In this study, we altered root hairs through hormonal, nutrient, and environmental factors to decipher the cellular scale (no scale, universal scale, or internal scale) maintained by the nucleus. We utilized the live cell imaging combined with a quantitative cell biology approach and, surprisingly discovered that the nucleus always follows an internal scale in the root hair cell. This finding dramatically shifted our view about the nuclear position in a polarized cell and will have a potential to test across the tree of life. Altogether, understanding the cellular scale involved with nucleus positioning will have broad implications. It encourages a reexamination of textbooks and reinforces the agricultural importance in a changing climate.

plant biology↗

The sugar-beet cyst nematode effector Hs2B11 targets the Arabidopsis serine protease inhibitor AtPR-6 to favor parasitism

Cyst nematodes secrete effector proteins to manipulate host cell biology and suppress immunity, yet the mechanisms underlying these interactions remain largely unexplored. In this study, we characterize the function of Hs2B11, a Heterodera schachtii effector that was previously shown to be expressed in the dorsal gland of sugar-beet cyst nematodes (BCN). Here, we report that in Arabidopsis thaliana Hs2B11 functions as an immune regulator that modulates the production of elicitor-induced oxidative species, likely to favor parasitism. To elucidate the molecular basis of this immune suppression, we performed a yeast-two-hybrid screen and identified the host serine protease inhibitor AtPR-6 as a direct interactor of Hs2B11. We show that AtPR-6 acts as a positive regulator of plant immunity; its expression is induced upon nematode infection and knock-out of AtPR-6 compromises oxidative species production leading to higher susceptibility to H. schachtii infection. Conversely, AtPR-6 overexpression enhances immune responses resulting in increased resistance to BCN infection. Detailed analysis of this interaction demonstrated that Hs2B11 interacts with AtPR-6 using its carboxyl-terminal domain. AlphaFold2 predicts that the C-terminal domain forms a beta-solenoid-like structure with a ladder of serine residues organized across one of its surfaces. We propose that using this interface, Hs2B11 targets AtPR-6 via molecular titration, preventing the inhibitor from regulating host proteases that control immune signaling. These findings highlight a counter-defense strategy where a nematode effector neutralizes a specific host protease inhibitor to subvert plant immunity.

plant biology↗

RUST FUNGAL EFFECTORS MIMIC HOST TRANSIT PEPTIDES TO TRANSLOCATE INTO CHLOROPLASTS

Parasite effector proteins target various host cell compartments to alter host processes and promote infection. How effectors cross membrane-rich interfaces to reach these compartments is a major question in effector biology. Growing evidence suggests that effectors use molecular mimicry to subvert host cell machinery for protein sorting. We recently identified CTP1 (chloroplast-targeted protein 1), a candidate effector from the poplar leaf rust fungus Melampsora larici-populina that carries a predicted transit peptide and accumulates in chloroplasts. Here, we show that the CTP1 transit peptide is necessary and sufficient for accumulation in the stroma of chloroplasts, and is cleaved after translocation. CTP1 is part of a Melampsora-specific family of polymorphic secreted proteins whose members translocate and are processed in chloroplasts in a N-terminal signal-dependent manner. Our findings reveal that fungi have evolved effector proteins that mimic plant-specific sorting signals to traffic within plant cells.

Plant Biology↗

The T. ispahanicum elongated glume locus P2 maps to chromosome 6A and is associated with the ectopic expression of SVP-A1

In rice and wheat, glume and floral organ length are positively correlated with grain size, making them an important target to increase grain size and potentially yield. The wheat subspecies Triticum ispahanicum is known to develop elongated glumes and floral organs as well as long grains. These multiple phenotypic effects are controlled by the P2 locus, which was previously mapped to wheat chromosome 7B. Using three mapping populations, we show that the long glume locus P2 does not map to chromosome 7B, but instead maps to a 1.68 Mbp interval on chromosome 6A. Within this interval, we identified SVP-A1, a MADS box transcription factor which is the direct ortholog of the maize gene underlying the pod corn Tunicate locus and is a paralog to the T. polonicum elongated glume P1 gene. In T. ispahanicum, we identified a private allele which has a 482-bp deletion in the SVP-A1 promoter and is associated with ectopic and higher expression of SVP-A1 in the elongated glumes and floral organs. We used near-isogenic lines (NILs) to show that P2 has a consistent positive effect on the length of glume, lemma, palea, spike and grain. Based on the mapping data, natural variation, biological function of SVP genes in cereals and expression analyses, we propose the MADS-box transcription factor SVP-A1 as a promising candidate for P2. Key messageWe propose the MADS-box transcription factor SVP-A1 as a promising candidate gene for the elongated glume locus P2, which maps to chromosome 6A instead of the previously proposed chromosome 7B.

plant biology↗

Metabolome and transcriptome profiling of root chicory provide insights into laticifer development and specialized metabolism

Chicory roots produce inulin, a dietary fiber, as well as large quantities of bitter sesquiterpene lactones (STLs), which have valuable biological activities. In an effort to understand the compartmentalization of metabolism within chicory roots and the molecular basis of the development of laticifers that produce the chicory latex, we performed metabolomics and transcriptomics profiling. GC-MS and LC-MS identified a total of 22 580 features of which 135 were differentially abundant between cell types. Further analysis indicated that the major STLs accumulated primarily in the latex. Gene expression of known STL pathway genes indicates a compartmentalization of the biosynthesis across multiple tissues, with implications regarding the trafficking of pathway intermediates. Phytohormone measurements and gene expression analysis point to a major role for jasmonate signaling in the development and differentiation of laticifers. Furthermore, inulin accumulates mostly outside the laticifers but expression of inulin metabolic genes also point to a complex distribution and trafficking of inulin or inulin precursors across different root compartments. Altogether, the data presented here constitute a unique resource to investigate several biological processes in chicory roots, including laticifer development, STL biosynthesis and transport and inulin biosynthesis regulation. Significance statementA combination of transcriptomics, targeted and untargeted metabolomics of different tissues of chicory roots was generated. These data constitute a resource basis for the investigation of various processes taking place in chicory taproots, including sesquiterpene lactone biosynthesis, laticifer development and inulin biosynthesis and trafficking.

plant biology↗

Enabling Greenhouse Gas Emission Reduction while Improving Rice Yield with a Methane-Derived Microbial Biostimulant

Rice is a vital crop for food security and human nutrition, yet its cultivation produces [~]11% of total global anthropogenic methane (CH4) emissions - the second most important greenhouse gas (GHG). Modifications to rice management practice are necessary, both to increase yield and mitigate GHG emissions. We investigated the effect of a methane-derived microbial biostimulant on grain yield and GHG emissions from rice fields. Applications of microbial biostimulant resulted in significant enhancement of grain yield, even under different nitrogen management, with consistent reduction in GHG emissions. The study further outlines a potential mechanism for broad and diverse positive effects of microbial biostimulant on the paddy crop including in photosynthesis, tillering and panicle development. Observations from the study will help stakeholders and policy makers, leverage biological solutions like methane-derived microbial biostimulant to improve crop yield and address food security, while reducing anthropogenic CH4 emissions to meet targets agreed at COP26.

plant biology↗

A systems biology approach to explore the impact of maple tree dormancy release on sap variation and maple syrup quality

Maple sap is a complex nutrient matrix collected during Spring to produce maple syrup. The characteristics of sap change over the production period and its composition directly impacts syrup quality. This variability could in part be attributed to changes in tree metabolism following dormancy release, but little is known about these changes in deciduous trees. Therefore, understanding the variation in sap composition associated with dormancy release could help pinpoint the causes of some defects in maple syrup. In particular, a defect known as \"buddy\", is an increasing concern for the industry. This off-flavor appears around the time of bud burst, hence its name. To investigate sap variation related to bud burst and the buddy defect, we monitored sap variation with respect to a dormancy release index (Sbb) and syrup quality. First, we looked at variation in amino acid content during this period. We observed a shift in amino acid relative proportions associated with dormancy release and found that most of them increase rapidly near the point of bud burst, correlating with changes in syrup quality. Second, we identified biological processes that respond to variation in maple sap by performing a competition assay using the barcoded Saccharomyces cerevisiae prototroph deletion collection. This untargeted approach revealed that the organic sulfur content may be responsible for the development of the buddy off-flavor, and that dormancy release is necessary for the appearance of the defect, but other factors such as microbial activity may also be contributing.

plant biology↗

Yield losses associated with peanut smut incidence in Argentina: a quantitative synthesis across field studies

Peanut smut, caused by Thecaphora frezzii, is an important constraint to peanut production in Argentina, but quantitative estimates of yield losses across environments remain limited. We quantified the relationship between disease incidence and kernel yield using 922 observations from 26 field studies conducted in Cordoba, Argentina, between 2021 and 2025. Study-specific incidence-yield relationships were analyzed using linear regression, random-effects meta-analysis, and linear mixed-effects models. Peanut smut incidence was consistently associated with yield reduction across studies. The estimated damage coefficient ranged from 24.2 to 28.7 kg ha-{superscript 1} per 1% increase in disease incidence, corresponding to a relative yield reduction of 0.74-0.87% of attainable yield. In contrast, attainable yield varied markedly among studies, ranging from 1,370 to 5,409 kg ha-{superscript 1}. Although an exploratory segmented analysis suggested a breakpoint near 12% incidence, subsequent moderator analyses, study- specific regressions, and normalized response curves provided no evidence of a biologically meaningful change in the damage coefficient across incidence or yield classes. These results indicate that differences among environments were primarily associated with attainable yield rather than with changes in the magnitude of disease-associated yield loss. The resulting damage function provides a quantitative basis for yield-loss assessment and disease management in peanut.

plant biology↗

The effect of trans-cinnamic acid isolated from the root cultures of the Baikal skullcap (Scutellaria baicalensis) on the life expectancy and survival of Caenorhabditis elegans

Oxidative stress is an increase in reactive oxygen species, which are signaling molecules of various pathologies in the body of living beings. Baikal skullcap (Scutellaria baicalensis) is a valuable source of biologically active substances with various pharmacological activity. The aim of the study is to study the effect of trans-cinnamic acid isolated from root cultures of Scutellaria baicalensis on the lifespan of a model organism of C. elegans, as well as its survival under conditions of oxidative and thermal stress. It was shown that trans-cinnamic acid increased the lifespan of nematodes, while the best concentration of phytomaterials was 50 microns. In addition, all tested concentrations (10-200) had a positive effect on nematodes under oxidative stress caused by paraquat. No positive effect of trans-cinnamic acid was detected during thermal exposure. In general, the results show the antioxidant potential of trans-cinnamic acid from plant material under oxidative stress, as well as the positive effect of the substance on the lifespan of C. elegans.

plant biology↗

A conserved long intergenic non-coding RNA containing snoRNA sequences, lncCOBRA1, affects Arabidopsis germination and development

Long non-coding RNAs (lncRNAs) are an increasingly studied group of non-protein-coding transcripts with a wide variety of molecular functions gaining attention for their roles in numerous biological processes. Nearly 6,000 lncRNAs have been identified in Arabidopsis thaliana but many have yet to be studied. Here, we examine a class of previously uncharacterized lncRNAs termed CONSERVED IN BRASSICA RAPA (lncCOBRA) transcripts that were previously identified for their high level of sequence conservation in the related crop species Brassica rapa, their nuclear-localization and protein-bound nature. In particular, we focus on lncCOBRA1 and demonstrate that its abundance is highly tissue and developmental specific, with particularly high levels early in germination. lncCOBRA1 contains two snoRNAs domains within it, making it the first sno-lincRNA example in a non-mammalian system, though we find that it is processed differently than its mammalian counterparts. We further show that plants lacking lncCOBRA1 display patterns of delayed gemination and are overall smaller than wild-type plants. Lastly, we identify the proteins that interact with lncCOBRA1 and examine the protein-protein interaction network of lncCOBRA1-interacting proteins.

plant biology↗

Disentangling the importance of microbiological and physicochemical properties of Ethiopian field soils for the Striga seed bank and sorghum infestations

Striga hermonthica (Striga) is a parasitic weed that severely affects sorghum yields in sub-Saharan Africa. Recent studies highlighted the soil microbiomes potential to suppress Striga through interference with specific stages in its life cycle. In this study, meta-analysis of 48 Ethiopian field soils revealed that microbial communities and their interactions with soil physico-chemical properties correlated with Striga field occurrence. Striga infestation of sorghum and soil seedbank levels were negatively correlated with clay content and the nutrients potassium, sulfur, calcium, and carbon. Microbiome analyses indicated that fungal communities were more responsive than bacteria to changes in Striga infestation and seedbank levels, with distinct microbial compositions even in soils where Striga was not detected. Specific fungal and bacterial genera showed both positive and negative correlations with Striga measures, but patterns rarely held across taxonomic levels, highlighting the complexity of microbiome-Striga interactions. To begin to validate these correlations, we tested an isolate from the fungal genus Neocosmospora, which negatively correlated with the Striga seedbank, and showed that this isolate promotes Striga seed germination in vitro, suggesting potential for biological control of Striga. The data and analysis methods are integrated and shared in a public Shiny App for broader analysis and continued research on soil-Striga interactions.

plant biology↗

A simple and sensitive SYBR Gold-based assay to quantify DNA-protein interactions

A simple, accessible, and inexpensive assay to quantify the strength of DNA-protein interactions was developed. The assay relies on capturing DNA-protein complexes using an affinity resin that binds tagged, recombinant proteins. Sequential washes with filtration spin cups and centrifugation remove non-specific interactions in a gentle, uniform manner and a final elution isolates specific DNA-protein complexes. SYBR Gold nucleic acid stain is added to the eluted product and the fluorescence intensity accurately quantifies the amount of captured DNA, ultimately illustrating the relative strength of the DNA-protein interaction. The major utility of the assay resides in the versatility and quantitative nature of the SYBR Gold:nucleic acid interaction, eliminating the need for customized or labeled oligos and permitting relatively inexpensive quantification of binding capacity. The assay also employs DNA-protein complex capture by the very common purification tag, 6xHis, but other tags could likely be utilized. Further, SYBR Gold fluorescence is compatible with a wide variety of instruments, including UV transilluminators, a staple to any molecular biology laboratory. This assay was used to compare the binding capacities of different Auxin Response Factor (ARF) transcription factors to various dsDNA targets, including the classical AuxRE motif and several divergent sequences. Results from dose-response assays suggest that different ARF proteins might show distinct comparative affinities for AuxRE variants, emphasizing that specific ARF-AuxRE binding strengths likely contribute to the complex and fine-tuned cellular auxin response.

plant biology↗

The evidence for anthocyanins in the betalain-pigmented genus Hylocereus is weak

Here we respond to Zhou et al., 2020 "Combined Transcriptome and Metabolome analysis of Pitaya fruit unveiled the mechanisms underlying Peel and pulp color formation" published in BMC Genomics. Given the evolutionary conserved anthocyanin biosynthesis pathway in betalain-pigmented species, we are open to the idea that species with both anthocyanins and betalains might exist. However, in absence of LC-MS/MS spectra, apparent lack of biological replicates, and no comparison to authentic standards, the findings of Zhou et al., 2020 are not a strong basis to propose the presence of anthocyanins in betalain-pigmented pitaya. In addition, our re-analysis of the datasets indicates the misidentification of important genes and the omission of key anthocyanin synthesis genes ANS and DFR. Finally, our re-analysis of the RNA-Seq dataset reveals no correlation between anthocyanin biosynthesis gene expression and pigment status.

plant biology↗

Biosynthesis of Silver nanoparticles using Drimia indica and exploring its antibacterial profiling

Biological synthesis reflects as an eco-friendly, nontoxic and easy method of nanoparticle preparation. Present investigation deals with biosynthesis of silver nanoparticles using Drimia indica leaf extract. Initially the synthesized silver nanoparticles were characterized and confirmed by UV-Vis spectroscopy, X-ray diffraction (XRD) and SEM. The synthesized nanoparticles when used for determination of antibacterial activity, by Microtitre Broth Dilution method exhibited remarkable activity against Pseudomonas aeruginosa, Klebsiella pneumoniae and Escherichia coli.

plant biology↗

Axenic in-vitro cultivation of nineteen peat-moss (Sphagnum L.) species as a resource for basic biology, biotechnology and paludiculture

O_LIThe cultivation of Sphagnum mosses reduces CO2 emissions by rewetting drained peatlands and by substituting peat with renewable biomass. Sphagnum farming requires large volumes of founder material, which can only be supplied sustainably by axenic cultivation in bioreactors. C_LIO_LIWe established axenic in-vitro cultures from sporophytes of 19 Sphagnum species collected in Austria, Germany, Latvia, Netherlands, Russia and Sweden, namely S. angustifolium, S. balticum, S. capillifolium, S. centrale, S. compactum, S. cuspidatum, S. fallax, S. fimbriatum, S. fuscum, S. lindbergii, S. medium/divinum, S. palustre, S. papillosum, S. rubellum, S. russowii, S. squarrosum, S. subnitens, S. subfulvum, and S. warnstorfii. These species cover five of the six European Sphagnum sections, namely Acutifolia, Cuspidata, Rigida, Sphagnum and Squarrosa. C_LIO_LITheir growth was measured in axenic suspension cultures, whereas their ploidy was determined by flow cytometry and compared with the genome size of Physcomitrella patens. We identified haploid and diploid Sphagnum species, found that their cells are predominantly arrested in the G1-phase of the cell cycle, and did not find a correlation between plant productivity and ploidy. C_LIO_LIWith this collection, high-quality founder material for diverse large-scale applications but also for basic Sphagnum research is available from the International Moss Stock Center (IMSC). C_LI

plant biology↗