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bioRxiv · 10.64898/2026.09.14.751390

A meta-analysis on the effects of pollutants on the earthworm microbiota

Raassina, T. M.·Sun, L.·Duplouy, A.·Phillips, H. R. P.
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Abstract

Like for many other organisms, earthworms host a microbiota consisting of bacteria, fungi and other micro-organisms originating from their surrounding environment. In earthworms, these microbes, either associated with the gut, skin, kidney-like nephridia, gizzard or cocoons, aid their hosts with the digestion of organic matter, immune responses against pathogens, and/or detoxification. Unfortunately, pollution is an increasing threat to soil health and soil biodiversity, and numerous articles have characterized both the microbial communities associated with earthworms, as well as the effects of soil pollution on these microbial communities. Here, we aim to synthesize data from across 159 articles to identify consistent global patterns and gaps in the study of earthworms' microbial communities. Additionally, we combined 16S rRNA metabarcoding data from almost 30 articles in a meta-analysis to evaluate the changes in the diversity of earthworm's and surrounding soil's bacterial microbiota after pollutant exposure. Through an evidence map, we clearly showed that most of the earthworm microbiota data came from the Eisenia fetida species reared in laboratory conditions, and only a handful of studies sequenced fungi (ITS) and protists (18S rRNA) in addition to bacteria and archaea (16S rRNA). The scarcity of studies from wild populations, environmental conditions, and the low microbial diversity targets and sources, cannot support a comprehensive view on earthworm's microbial ecology. Nonetheless, results of the meta-analysis indicate that the data did not support the occurrence of significant changes in the microbiota richness and diversity as result of pollution exposure. However, the microbial communities altered their composition, becoming more dissimilar. We suspect the microbiota response to pollution to be host-species specific, but the lack of data severely limited our ability to further elucidate the effect of pollution on earthworm microbiota.

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Raassina, T. M., Sun, L., Duplouy, A., Phillips, H. R. P.. 2026-09-17. A meta-analysis on the effects of pollutants on the earthworm microbiota. https://doi.org/10.64898/2026.09.14.751390

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