Search bioRxiv⌕ Search

bioRxiv · 10.64898/2026.09.14.750986

Extraocular Photoreception Controls nocturnal hatching via a neuroendocrine pathway in False Clownfish

Abstract

Hatching is the transition from embryo to larva in oviparous animals. Birds, reptiles, and insects rupture the eggshell mechanically, whereas fish and amphibians digest the egg envelope using hatching enzymes. When and where larvae emerge influences their fitness. Many species regulate hatching timing using environmental cues, such as light, oxygen availability, and physical stimuli. In fish, hatching is driven by a neuroendocrine event that triggers hatching enzyme secretion; however, the mechanisms controlling this event are unknown. Using the false clownfish Amphiprion ocellaris, which hatches synchronously within 1-2 h after sunset, we showed that the role of thyrotropin-releasing hormone (TRH) as a hatching hormone, previously established in zebrafish and medaka, extended to clownfish, where TRH activated Ca2+; signaling in hatching gland cells through its receptor trhra, reinforcing the TRH-Ca2+-hatching enzyme axis as a conserved core module of teleost hatching. In clownfish, this module was additionally placed under upstream control by extraocular photoreception because dark-induced hatching persisted in eyeless embryos. This photoreceptive system was most sensitive to green light (550 nm), and several opsins with absorbance maxima in the corresponding middle- to long-wavelength range were expressed outside the eyes of pre-hatching embryos. Coupling extraocular photoreception to a conserved neuroendocrine module placed a critical life-history transition under stringent photic control, releasing larvae only in complete darkness, an adaptation that may have underpinned the success of this lineage in predator-rich coral reefs.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

YAMANAKA, S., Yamashita, T., Kamei, Y., Takeda, H., Yamanaka, T., Kinoshita, M.. 2026-09-16. Extraocular Photoreception Controls nocturnal hatching via a neuroendocrine pathway in False Clownfish. https://doi.org/10.64898/2026.09.14.750986

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Sea slugs unplugged: Review of subpopulation sampling in phylogeographic studies of nudibranchs and their allies

Nudibranchs and other sea slugs include many cryptic species groups with unknown phenotypic and ecological diversity. How broadly and deeply should researchers sample those cryptic species pairs to capture the genetic variation within each species and potential adaptive differences between species? Fast and inexpensive surveys of genetic diversity that sample a single well-known locus across the geographical range ("phylogeography unplugged") have long been used to identify structured populations and guide choice of sampling localities for subsequent comparative genomic or phenotypic studies of the same species. Results from such studies might also be used to better understand the expected relationships between sampling and population structure in future comparative studies in other species (including many marine gastropods) for which an unplugged phylogeographic survey is not available or impractical. We reviewed analyses of molecular variance that used mitochondrial barcode sequences from marine sea slugs, and we asked whether there are characteristic patterns of subpopulation sampling that are associated with the magnitude and geographical scale of differentiation. We found wide variation in sampling designs: studies with both many and few samples discovered significant population differentiation or broadly similar distribution of haplotypes on both large and small spatial scales, in species from different higher taxonomic groups and oceans. We found two significant associations between sampling variables and population genetic variables, and we suggest using those associations to help guide (or understand the consequences of) sampling design in future studies.

zoology↗

A novel methodology for assessing reinforcement choice in primates under human care

Positive Reinforcement Training is a technique commonly employed in zoological collections to elicit a desired behaviour from an animal under human care. Typically, a food item is offered as a reward for performing that behaviour. Three non-human primate species (Mandrillus sphinx, Pan troglodytes, and Hylobates lar) were offered four different foods (banana, grape, apple, and sweet potato) in a series of choice experiments. Latent variable models were employed to investigate which foods were the best selection to use as reinforcement items. Results show that food preference varies between the three primate species. Pan troglodytes and H. lar showed strong preferences for grape and banana, whereas M. sphinx showed a very strong preference for sweet potato. This study indicates that foraging ecology might play an important part in fruit selection and preference in primates. The findings highlight that understanding a species' natural behaviour and dietary preferences is key to informing reinforcement and training decisions.

zoology↗

A comprehensive identification protocol for postcranial bones of Southeast Asian Ruminantia. Part 2: Morphological criteria for small and medium-sized species

The taxonomic identification of postcranial elements from small and medium-sized ruminants represents a significant challenge in zooarchaeological and Late Quaternary paleontological studies, particularly in biodiversity-rich regions such as continental Southeast Asia. This study presents a comprehensive osteological reference framework for the small and medium-sized Ruminantia of this region, based on a comparative sample of 228 specimens representing 14 species across three families (Bovidae, Cervidae, and Moschidae). Osteological characters were first described on a small initial specimen set and subsequently scored across the full sample. Although a small number of character states were found to be unique to specific taxa, most proved highly variable, limiting their individual identification potential. To address this, a Random Forest and a Naive Bayes classifier were applied to assess the discriminatory power of character combinations across four taxonomic ranks (Family, Subfamily, Genus, and Species) on independent bones. Both approaches performed similarly, achieving mean identification accuracies of 87-86% at the family level, 69% at the subfamily level, 50% at the genus level, and 35-33% at the species level. The Naive Bayes models were further deployed as an interactive web application, allowing users to perform bone identification based on any combination of observable character states from a single anatomical element. Our results highlight the limits of morphological identification of postcranial elements in this taxonomic and biogeographic context, while demonstrating that a transparent, reproducible, and statistically grounded approach can still represent a significant step forward for zooarchaeological and Late Quaternary paleontological studies in Southeast Asia and beyond.

zoology↗