Leukemic Stem Cell Subtypes Drive Distinct Niche Remodeling in Acute Myeloid Leukemia

Prummel, K. D.; Mathioudaki, A.; Berest, I.; Sood, S.; He, L.; Richter, T.; Baskan, Y.; Rauchaus, J.; Holitsch, C.; Kamal, A.; Jauregui, J. P.; Hart, D.; Moussa, R.; Reinhardt, R.; Garg, S.; Waskow, C.; Mueller-Tidow, C.; Saka, S. K.; Kokkaliaris, K.; Essers, M. A. G.; Pabst, C.; Zaugg, J. B.

doi:10.64898/2026.08.24.746513

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bioRxiv · 10.64898/2026.08.24.746513

Leukemic Stem Cell Subtypes Drive Distinct Niche Remodeling in Acute Myeloid Leukemia

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Abstract

Leukemic stem cells (LSCs) sustain acute myeloid leukemia (AML) and are implicated in therapy resistance and relapse. Yet, it remains unknown how LSCs remodel the bone marrow niche. AML is known to alter stromal and vascular microenvironments, but these effects are difficult to separate from bulk leukemic burden and immune inflammation. Here, we use isogenic human AML xenografts with distinct LSC characteristics but comparable engraftment to define LSC-associated niche remodeling in vivo. Single-cell profiling revealed that LSC-high AML shifts the mesenchymal niche toward fibro-inflammatory states, expanding Fmod+ fibroblasts and Cd34+ perivascular fibroblast-like cells while suppressing osteolineage differentiation. The leukemic compartment remained heterogeneous, with a specific MEP-like LSC population expressing niche-remodeling ligands including TGFB1, IL1B, and ANGPT1. LSC-high AML activated a TGF{beta}-responsive, CREB3L1-controlled fibroblast trajectory, and perturbing TGF{beta} signaling or CREB3L1 activation reduced stromal support for AML cells. These findings identify a specific LSC subtype as a source of niche-remodeling cues that shape specialized leukemia-supportive niches.

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Prummel, K. D., Mathioudaki, A., Berest, I., Sood, S., He, L., Richter, T., Baskan, Y., Rauchaus, J., Holitsch, C., Kamal, A., Jauregui, J. P., Hart, D., Moussa, R., Reinhardt, R., Garg, S., Waskow, C., Mueller-Tidow, C., Saka, S. K., Kokkaliaris, K., Essers, M. A. G., Pabst, C., Zaugg, J. B.. 2026-08-25. Leukemic Stem Cell Subtypes Drive Distinct Niche Remodeling in Acute Myeloid Leukemia. https://doi.org/10.64898/2026.08.24.746513

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