Metagenomic analysis of the effects of European bison Bison bonasus (Linnaeus, 1758) presence on soil community structure and function in West Blean and Thornden Woods, Kent

Xu, C.; Schalkwyk, H. V.; Powell, O.; Gustave, C.; Ball, L.; Ross, K.; Murray, E.; Aguirregoicoa, H.; Mackins, H.; Swinnerton, K.; Creedy, T. J.; Sivess, L.; Jones, J.; Castillo, K.; Bleet, R.; Salatino, S.; Mendis, Y.-T. C.; Lebre, P.; Mkrtchyan, H.; Cuber, P.

doi:10.64898/2026.08.19.745704

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bioRxiv · 10.64898/2026.08.19.745704

Metagenomic analysis of the effects of European bison Bison bonasus (Linnaeus, 1758) presence on soil community structure and function in West Blean and Thornden Woods, Kent

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Abstract

The reintroduction of extinct or endangered species to restore ecosystem function is an essential aspect of rewilding. The Wilder Blean Project at West Blean and Thornden Woods in Canterbury, UK, is committed to rewilding natural processes and enhancing biodiversity in one of England's oldest and largest areas of ancient woodland. The introduction of European bison (Bison bonasus) is an important part of the project. However, how the reintroduction of large herbivores influences local biodiversity and ecosystem functions during the early stages of rewilding remains poorly understood. Soil samples were collected from the same sampling sites before and two years after bison were reintroduced and profiled by metagenomic sequencing using Oxford Nanopore Technologies sequencing platforms. The results showed that the alpha diversity of soil organisms did not change significantly before and after the introduction of European bison, while beta diversity showed modest shifts in community composition. The relative abundance of some nitrogen-fixing and photosynthetic microbial genera showed declines in the 2024 Bison Area, while the mycorrhizal fungus genus Rhizophagus was significantly less abundant than in the 2024 Control Area. Despite relatively stable taxonomic diversity, functional composition differed significantly between the 2022 and 2024 Bison areas and among the 2024 rewilding treatments, revealing a decoupling between taxonomic diversity and functional composition. Amino acid synthesis pathways and carbon metabolism pathways were significantly enriched. These findings highlight the potential of long-read Oxford Nanopore metagenomics to reveal functional shifts that may not be apparent from taxonomic diversity alone. Although these early-stage responses cannot yet predict long-term rewilding trajectories, continued longitudinal monitoring integrating microbial, soil physicochemical, and ecosystem-level measurements will be essential to determine the persistence and ecological significance of these functional shifts.

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Xu, C., Schalkwyk, H. V., Powell, O., Gustave, C., Ball, L., Ross, K., Murray, E., Aguirregoicoa, H., Mackins, H., Swinnerton, K., Creedy, T. J., Sivess, L., Jones, J., Castillo, K., Bleet, R., Salatino, S., Mendis, Y.-T. C., Lebre, P., Mkrtchyan, H., Cuber, P.. 2026-08-20. Metagenomic analysis of the effects of European bison Bison bonasus (Linnaeus, 1758) presence on soil community structure and function in West Blean and Thornden Woods, Kent. https://doi.org/10.64898/2026.08.19.745704

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