Utilization of cyanobacterial siderophore cyanochelin B by phylogenetically distant heterotrophs suggest its role in mediating microbial interactions

Falcao, B. P.; Martinez Yerena, J. A.; Galica, T.; Mares, J.; Laffont, C.; Stenclova, L. M.; Sharma, S.; Tomasch, J.; Aggarwal, D.; Masek, J.; Divoka, P.; Capkova, K.; Besta, T.; Krynicka, V.; Kummerli, R.; Hrouzek, P.

doi:10.64898/2026.07.27.740964

bioRxiv · 10.64898/2026.07.27.740964

Utilization of cyanobacterial siderophore cyanochelin B by phylogenetically distant heterotrophs suggest its role in mediating microbial interactions

Falcao, B. P.·Martinez Yerena, J. A.·Galica, T.·Mares, J.·Laffont, C.·Stenclova, L. M.·Sharma, S.·Tomasch, J.·Aggarwal, D.·Masek, J.·Divoka, P.·Capkova, K.·Besta, T.·Krynicka, V.·Kummerli, R.·Hrouzek, P.

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Abstract

Cyanobacteria are key prokaryotic primary producers in diverse ecosystems, yet the role of cyanobacterial siderophores in shaping their associated microbiomes remains unexplored. Our study demonstrates the benefits provided to the heterotrophic co-habitants of filamentous cyanobacteria in terrestrial microbial biofilms, focusing on the recently discovered widespread siderophores cyanochelins. To address the acceptance of cyanochelin B (CychB) across multiple bacterial classes, we first investigated its role in providing iron to a model siderophore producer P. aeruginosa PAO1 and selected Pseudomonas natural isolates, which were found to utilize CychB under iron limiting conditions while downregulating endogenous siderophore production. In response to CychB, PAO1 expresses a siderophore internalization cluster, which is localized in multiple Pseudomonas natural isolates. Using metagenome analysis, we characterized the bacterial community recruited along with CychB producing Phormidesmis cyanobacteria under long-term iron starvation. Potential CychB acceptor bacteria associated with the CychB producer were predominantly lacking endogenous siderophore machineries. Using siderophore selective pressure, we isolated a genuine CychB acceptor, gram-negative bacterium Methyloversatilis sp. S146 and demonstrated that its genome hosts an iron processing cluster overexpressed after CychB feeding, recognizing Methyloversatilis as a candidate for further mechanistic investigation of iron acquisition-driven microbial interactions. Our results indicate that CychB supports a specific subset of co-habiting heterotrophic bacteria during iron starvation, further emphasizing the role of cyanobacteria as key drivers of nutrient flows within globally important microbial soil crust ecosystems, supporting microbial life in nutrient-limited environments. These findings provide a mechanistic foundation to elucidate the role of cyanochelins as a public good in these communities.

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Falcao, B. P., Martinez Yerena, J. A., Galica, T., Mares, J., Laffont, C., Stenclova, L. M., Sharma, S., Tomasch, J., Aggarwal, D., Masek, J., Divoka, P., Capkova, K., Besta, T., Krynicka, V., Kummerli, R., Hrouzek, P.. 2026-07-27. Utilization of cyanobacterial siderophore cyanochelin B by phylogenetically distant heterotrophs suggest its role in mediating microbial interactions. https://doi.org/10.64898/2026.07.27.740964

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