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bioRxiv · 10.64898/2026.06.15.732469

Sequential- vs. density gradient- centrifugation for the isolation of mitochondria-containing extracellular vesicles

Dave, K. M.·Brady, B. T.·Govindaswamy, B.·Basudkar, V. S.·Stolz, D. B.·Soundara Manickam, D.
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Abstract

A subset of extracellular vehicles (EVs) with particle diameters >200 nm, large vesicles (lEVs) contain mitochondria that increase recipient cell bioenergetics. To date, sequential centrifugation (SC) is the most reported protocol to separate lEVs from the smaller EVs (<200 nm)/exosomes. We have previously demonstrated that lEVs derived from brain endothelial cells (BECs) using the standard SC method transferred their innate mitochondria to recipient BECs, increased recipient BEC bioenergetics, reduced brain infarct volume, and improved behavioral outcomes in a mouse model of transient ischemic stroke. Despite their promising therapeutic activity, SC-isolated lEVs are likely a mixture of mitochondria-containing lEVs and non-mitochondria-containing lEVs. We hypothesized that subsequent purification of SC-isolated lEVs using density-gradient centrifugation (DGC) may yield a purer sample of mitochondria-containing lEVs. We established a DGC protocol to purify lEVs. In this pilot study, lEVs isolated using SC and DGC protocols were compared to determine their physicochemical characteristics and their effects on recipient BEC bioenergetics. SC-lEVs and DGC-lEVs both significantly restored ATP levels in OGD-injured BECs with no difference between groups. However, a Seahorse mitochondrial function assay revealed distinct functional effects: SC-lEVs did not significantly alter respiration, whereas DGC-lEVs induced a dose-dependent increase in oxygen consumption rate, indicating enhanced oxidative phosphorylation. These findings demonstrate that DGC purification yields a more mitochondria-enriched and functionally potent lEV preparation with an enhanced capacity to restore oxidative phosphorylation in ischemic BECs. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=132 SRC="FIGDIR/small/732469v1_ufig1.gif" ALT="Figure 1"> View larger version (38K): org.highwire.dtl.DTLVardef@102b68borg.highwire.dtl.DTLVardef@11e7df1org.highwire.dtl.DTLVardef@de7161org.highwire.dtl.DTLVardef@1e5d64c_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Dave, K. M., Brady, B. T., Govindaswamy, B., Basudkar, V. S., Stolz, D. B., Soundara Manickam, D.. 2026-06-17. Sequential- vs. density gradient- centrifugation for the isolation of mitochondria-containing extracellular vesicles. https://doi.org/10.64898/2026.06.15.732469

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