Cryptochrome Loss Drives COPD-like Lung Pathology through Disrupted Alveolar Epithelial Proliferation and Immune Homeostasis

Mills, T. W.; Han, C.; Lim, J. Y.; Koike, N.; Kim, S. Y.; Wi, J.; Liu, H.; Wang, Y.; Yagita, K.; Alcorn, J. L.; Chen, Z.; Yoo, S.-H.

doi:10.64898/2026.05.19.726266

bioRxiv · 10.64898/2026.05.19.726266

Cryptochrome Loss Drives COPD-like Lung Pathology through Disrupted Alveolar Epithelial Proliferation and Immune Homeostasis

Mills, T. W.·Han, C.·Lim, J. Y.·Koike, N.·Kim, S. Y.·Wi, J.·Liu, H.·Wang, Y.·Yagita, K.·Alcorn, J. L.·Chen, Z.·Yoo, S.-H.

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Abstract

Chronic obstructive pulmonary disease (COPD) is a progressive lung disease characterized by alveolar destruction, impaired epithelial regeneration and chronic inflammation. While circadian disruption has been linked to COPD pathogenesis, the cellular mechanisms remain unclear. Here, we identify the core clock components Cryptochrome 1 and 2 (Cry1/2) as essential regulators of alveolar epithelial cell proliferation and pulmonary immune homeostasis. Cry1/2 double knockout (dKO) mice exhibit spontaneous emphysema-like pathology, including airspace enlargement, increased lung compliance, and inflammatory cell infiltration without environmental insults. Mechanistically, Cry1/2-deficient alveolar epithelial cells display reduced proliferative capacity, and transcriptomic profiling revealed a pronounced shift toward a more proximal airway-like phenotype. Notably, these cells share a gene signature with human COPD lungs in pathways involving immune regulation. Furthermore, Cry1/2-deficient macrophages show elevated responsiveness to LPS. Bone marrow (BM) transplantation revealed that mice receiving Cry1/2 dKO BM suffer from enhanced lung inflammation without airspace enlargement, supporting a critical role of epithelial Cry1/2 in maintaining alveolar integrity. Importantly, treatment with Nobiletin, a circadian rhythm-modulating compound, mitigates NF-{kappa}B activation and ameliorates lung inflammation and structural damage in Cry1/2 dKO mice. These findings establish CRY1/2 as critical circadian regulators of epithelial cell proliferation and immune homeostasis, and highlight the therapeutic potential of targeting circadian pathways in COPD.

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Mills, T. W., Han, C., Lim, J. Y., Koike, N., Kim, S. Y., Wi, J., Liu, H., Wang, Y., Yagita, K., Alcorn, J. L., Chen, Z., Yoo, S.-H.. 2026-05-21. Cryptochrome Loss Drives COPD-like Lung Pathology through Disrupted Alveolar Epithelial Proliferation and Immune Homeostasis. https://doi.org/10.64898/2026.05.19.726266

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