Search bioRxiv⌕ Search

bioRxiv · 10.64898/2026.05.10.723974

The inositol pyrophosphate 5-InsP7 promotes DNA repair by disrupting RAD51 binding to the C-terminus of BRCA2

Abstract

The inositol pyrophosphate 5-InsP7, composed of an inositol ring substituted with five monophosphates and one diphosphate, modulates diverse cellular functions by protein pyrophosphorylation, during which its {beta}-phosphate moiety is transferred to a pre-phosphorylated serine residue on the target protein. In mammals, the synthesis of 5-InsP7 from its precursor InsP6 is catalyzed by a family of enzymes called IP6Ks. We report that during recovery from genotoxic stress, cells lacking the IP6K isoform IP6K1 exhibit prolonged persistence of DNA damage foci marked by the homologous recombination repair protein RAD51. Expression of catalytically active but not inactive IP6K1 reverses this defect, implying that 5-InsP7 supports the dissolution of RAD51 foci. Upon DNA damage, we observe an increase in IP6K1 activity, contingent on its phosphorylation by the protein kinases CK2 and CDK1. IP6K1 is recruited to sites of DNA damage, and interacts with RAD51, CDK1, and the C-terminal domain (CTD) of BRCA2. Disruption of binding between RAD51 and BRCA2-CTD is known to support the disassembly of RAD51 foci. We show that 5-InsP7 can pyrophosphorylate RAD51, and that the presence of 5-InsP7 diminishes RAD51 binding to BRCA2-CTD. Our findings provide a mechanism by which 5-InsP7 synthesized by IP6K1 facilitates the removal of RAD51 from sites of DNA repair. Summary statementInositol hexakisphosphate kinase 1, an enzyme that catalyses the synthesis of the inositol pyrophosphate 5-InsP7, localises to DNA double strand breaks, and engages in interactions with proteins involved in homologous recombination (HR)-mediated DNA repair. 5-InsP7 disrupts the interaction between RAD51 and the C-terminus of BRCA2, promoting dislodgement of RAD51 from DNA damage sites post-repair.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Ganguli, S., Bhandari, R.. 2026-05-13. The inositol pyrophosphate 5-InsP7 promotes DNA repair by disrupting RAD51 binding to the C-terminus of BRCA2. https://doi.org/10.64898/2026.05.10.723974

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

The nuclear membrane protein Samp1 links peripheral genome organization to the myogenic transcriptional program

Samp1 is an inner nuclear membrane protein required for myogenic differentiation and involved in chromatin organization at the nuclear periphery. Here, we investigated whether these functions are connected by studying the effects of Samp1 depletion during C2C12 myogenic differentiation using immunofluorescence microscopy, RNA sequencing, FRIC, and chromosome-positioning analysis. Samp1-depleted cells showed strongly reduced MyHC expression and virtually abrogated multinucleated fiber formation. Although cell-cycle withdrawal was not prevented, the transcriptional program driving differentiation was drastically perturbed, with reduced muscle-associated transcripts and incomplete repression of genes normally downregulated during myogenesis. Samp1 depletion also disrupted peripheral chromatin organization and prevented the accumulation of peripheral heterochromatin typically seen during differentiation. In addition, radial chromosome distribution was disrupted, evidenced by the failure of chromosome 8 to reposition to the nuclear periphery during differentiation. Together, these findings link the requirement for Samp1 in myogenic differentiation to its role in genome organization at the nuclear periphery.

cell biology↗

Unraveling the metabolic landscape of alkaptonuria through a human-relevant in vitro liver disease model

Alkaptonuria (AKU) is a rare inherited metabolic disorder of tyrosine catabolism caused by a deficient homogentisate 1,2-dioxygenase (HGD) enzyme. This results in the accumulation of homogentisic acid (HGA), driving a progressive multisystem pathology characterized by debilitating early-onset osteoarthritis due to connective tissue degeneration. While previous in vitro studies have primarily relied on exogenous HGA exposure in osteoarticular cell models, the direct metabolic consequences of endogenous HGD deficiency within its native hepatic context remain poorly understood. Here, we established the first human-relevant HGD knockout hepatic in vitro model using a universal in-house-developed homology-directed repair approach. Integrative multi-omic analysis revealed that HGD deficiency induces widespread metabolic rewiring extending beyond disrupted tyrosine catabolism. HGD-deficient hepatocytes exhibited elevated oxidative stress accompanied by impaired mitochondrial respiration and a pseudohypoxic metabolic adaptation toward increased glycolytic dependency. Despite this glycolytic shift, the cells displayed reduced anabolic and translational activity alongside attenuated proliferation, consistent with a chronic stress-adaptive survival state rather than a proliferative metabolic phenotype. This study provides systems-level insights into the pathophysiology of AKU and establishes a versatile platform for mechanistic and therapeutic investigation.

cell biology↗

The circadian clock regulates KCNH2 (hERG) promoter activity through daily temperature rhythms.

Background: KCNH2 encodes Kv11.1 channel proteins that conduct the rapidly activating delayed-rectifier K+ current (IKr), which is critical for cardiac repolarization. KCNH2 encodes two functional isoforms, Kv11.1a and Kv11.1b, via alternative transcription start sites. Kv11.1a is the principal determinant of cardiac IKr and ventricular repolarization. The circadian clock, a transcriptional-translational feedback loop that cycles with a period of ~24 hours and drives the circadian expression of many genes, including Kcnh2 in the mouse heart. Because daily body temperature rhythms provide a systemic signal that synchronizes cardiac circadian clocks, we tested whether physiological temperature cycles drive the circadian promoter activity of the cloned human KCNH2 (hKCNH2) promoter. Hypothesis: hKCNH2 is a direct transcriptional target of the circadian clock, with temperature driving its promoter activity through BMAL1:CLOCK acting at a conserved tandem E-box. Methods: We cloned the conserved proximal promoter of KCNH2 (-1631 bp upstream of Kv11.1a exon 1) to generate hKCNH2 promoter luciferase reporter constructs. Constructs were transfected into C2C12 myotubes and synchronized by serum shock (static 37{degrees}C) or temperature cycling (36.5-38.5{degrees}C). Bioluminescence was recorded and assessed for period, phase, and amplitude. BMAL1:CLOCK dependence was tested via dominant-negative CLOCK{Delta}19 co-expression. Results: Temperature cycling did not exhibit the rapid damping characteristic of serum-shock-synchronized oscillations, consistent with continuous entrainment by an external zeitgeber rather than a free-running oscillator. Deletion analysis identified a conserved tandem E-box required for oscillation under both serum shock and temperature cycling, and for BMAL1:CLOCK-dependent transactivation (1.75 {+/-} 0.21 vs. 0.86 {+/-} 0.06 RLU, p = 0.0038). CLOCK{Delta}19 reduced hKCNH2 promoter amplitude under temperature cycling without altering period. Conclusion: The circadian clock regulates KCNH2 promoter activity through daily temperature rhythms.

cell biology↗