Nanoscale rheological heterogeneity revealed by Single Particle orientation Tracking (SPoT) of ultrashort carbon nanotubes in brain tissue

Ruan, L.; Manko, H.; Gresil, Q.; Aleman-Castaneda, L. A.; Meras, M.; Sebastian, F.; Flavel, B.; Zaumseil, J.; Groc, L.; Brasselet, S.; Tondusson, M.; Cognet, L.

doi:10.64898/2026.05.04.721587

bioRxiv · 10.64898/2026.05.04.721587

Nanoscale rheological heterogeneity revealed by Single Particle orientation Tracking (SPoT) of ultrashort carbon nanotubes in brain tissue

Ruan, L.·Manko, H.·Gresil, Q.·Aleman-Castaneda, L. A.·Meras, M.·Sebastian, F.·Flavel, B.·Zaumseil, J.·Groc, L.·Brasselet, S.·Tondusson, M.·Cognet, L.

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Abstract

Transport in complex biological tissues is governed by local rheological heterogeneity at the nanoscale, yet probing such environments deep inside living systems remains challenging. Here, we introduce an orientation-sensitive single-particle tracking (SPoT) approach that simultaneously resolves translational and rotational dynamics of individual carbon nanotubes deep within biological tissue. By exploiting the intrinsic dipole-like emission and short-wave infrared luminescence of carbon nanotubes enhanced through the incorporation of quantum color-centers our method enables long-duration tracking with high signal-to-noise ratio in optically dense environments. Crucially, the length of these nanotubes can be precisely shortened down to a few tens of nanometers to adapt to diffusion environmental dimensions, further optimizing the tracking applicability. SPoT of single carbon nanotubes provides access to relative changes in local viscosity, steric constraints, and environmental anisotropy. When applied to the brain extracellular space, SPoT demonstrates that local variations in the translational and rotational diffusion of tracers are heterogeneous and not systematically correlated. By combining trajectory-based signatures of confinement with rotational dynamics, this analysis allows the local contributions of effective viscosity and spatial tortuosity to be disentangled. By enabling combined translational and rotational tracking of nano-emitters over unprecedented depths and timescales, this work establishes a new framework for probing nanoscale transport and rheological heterogeneity in intact biological tissues and more generally in complex diffusive environments.

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Ruan, L., Manko, H., Gresil, Q., Aleman-Castaneda, L. A., Meras, M., Sebastian, F., Flavel, B., Zaumseil, J., Groc, L., Brasselet, S., Tondusson, M., Cognet, L.. 2026-05-07. Nanoscale rheological heterogeneity revealed by Single Particle orientation Tracking (SPoT) of ultrashort carbon nanotubes in brain tissue. https://doi.org/10.64898/2026.05.04.721587

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