Search bioRxiv⌕ Search

bioRxiv · 10.64898/2026.04.16.718939

GPU-Accelerated Optimization Investigates Synaptic Reorganization Underlying Pathological Beta Oscillations in a Basal Ganglia Network Model

Abstract

ObjectivePathological beta-band oscillations (13 to 30 Hz) in the subthalamic nucleus (STN) are a hallmark of Parkinsons disease and a primary target for deep brain stimulation therapy, yet the specific pattern of synaptic reorganization that drives their emergence remains incompletely understood. We developed a GPU-accelerated computational framework to systematically investigate combinations of synaptic changes across basal ganglia pathways that produce Parkinsonian beta oscillations while satisfying literature-based electrophysiology constraints. ApproachWe implemented a biophysically detailed spiking network model of the STN, external globus pallidus (GPe), and internal globus pallidus (GPi) in JAX (a high-performance numerical computing Python library), achieving a 490-fold speedup over conventional CPU-based simulation. Using the Covariance Matrix Adaptation Evolution Strategy (CMA-ES) we optimized 10 network parameters across two stages: first establishing a healthy baseline matching primate electrophysiology data, then searching within biologically motivated bounds for synaptic modifications that reproduce Parkinsonian firing rates and beta power. Fixed in-degree connectivity ensured optimized parameters produced scale-invariant dynamics from 450 to 45000 neurons. All simulations ran on a single cloud GPU instance at 84 cents per hour. Main ResultsThe optimizer converged on a coordinated pattern of synaptic reorganization dominated by asymmetric changes within the STN-GPe reciprocal loop: STN to GPe excitation increased 2.21-fold while GPe to STN inhibition collapsed to 0.11-fold of its healthy value. STN to GPi and GPe to GPi pathways changed minimally (1.06-fold and 1.45-fold respectively). This configuration transformed asynchronous firing (beta: 0.4 percent of spectral power) into synchronized bursting with prominent beta oscillations (49.4 percent), with firing rate changes matching experimental observations. Network dynamics were invariant across a 100-fold range of network sizes (firing rate deviation less than 2.4 Hz; all metrics p less than 0.001 across 10 random seeds at 45000 neurons). We implemented a simplified deep brain stimulation model for validation purposes, which achieved complete beta suppression (49.4 percent to 0.0 percent) and restored GPi output to healthy levels. SignificanceThese results suggest that pathological beta oscillations emerge from a specific pattern of synaptic reorganization, namely the reduction of GPe inhibitory feedback to STN. The GPU-accelerated optimization framework, running on commodity cloud infrastructure, demonstrates an accessible platform for parameter exploration in neural circuit models and a foundation for generating synthetic training data for adaptive deep brain stimulation algorithms.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Nakkeeran, K. R., Anderson, W. S.. 2026-04-21. GPU-Accelerated Optimization Investigates Synaptic Reorganization Underlying Pathological Beta Oscillations in a Basal Ganglia Network Model. https://doi.org/10.64898/2026.04.16.718939

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Functional validation of allele-specific LMNB1 silencing in patient-derived astrocytes as a therapeutic option for Autosomal Dominant Leukodystrophy

Adult-onset Autosomal Dominant Leukodystrophy (ADLD) is a rare fatal leukodystrophy caused by increased LMNB1 gene dosage, most commonly resulting from duplication of the LMNB1 locus. Because ADLD is a gene dosage disorder, selective reduction of pathological LMNB1 expression represents a rational therapeutic strategy. Although allele-specific RNA interference has previously been shown to lower LMNB1 levels in patient-derived fibroblasts and directly reprogrammed neurons, its therapeutic effects have not been evaluated in disease-relevant human glial cells or using functional efficacy endpoints. Here, we established human induced pluripotent stem cell-derived astrocytes from ADLD patients as a human glial model in which to validate allele-specific LMNB1 silencing across molecular, cellular, and functional readouts. ADLD astrocytes recapitulated increased LMNB1 expression and characteristic nuclear abnormalities and displayed transcriptional alterations affecting extracellular matrix organization, calcium homeostasis, metabolism and RNA processing. Functionally, these cells also exhibited functional phenotypes suitable for therapeutic evaluation: astrocyte-conditioned medium impaired the viability of both murine and human oligodendroglial cultures, while conditioned-medium and direct astrocyte-seeding paradigms revealed impaired post-lesion myelin recovery in lysolecithin-treated cerebellar organotypic slices. Allele-specific LMNB1 silencing restored physiological LMNB1 levels, corrected nuclear abnormalities, attenuated astrocyte-mediated oligodendroglial toxicity, improved post-lesion myelin recovery, and was associated with selective transcriptional programs associated with extracellular support and cholesterol metabolism. Together, these findings provide molecular, cellular, and functional validation of allele-specific LMNB1 dosage correction in patient-derived human astrocytes and offer key support for LMNB1-lowering strategies in disease-relevant human glial cells.

neuroscience↗

Perceptual integration of multisensory haptic, visual, and auditory feedback for roughness discrimination in augmented reality

Understanding how our different senses interact to shape our perception is essential to design realistic and immersive virtual and augmented reality (VR/AR) experiences. The present study investigated how roughness perception can be modulated through haptic, visual, and auditory cues in AR using a vibrotactile wristband. Participants compared virtual textures varying in vibration frequency/amplitude, visual grain size, and friction sound. Results revealed strong linear relationships between stimulus parameters and perceived roughness, with haptic frequency and visual cues driving the highest discrimination performance. Adding non-informative sensory feedback reduced perceptual sensitivity, acting as noise. Individual differences emerged: participants who rated haptic as the easiest modality showed greater sensitivity to haptic variations, while visual-reliant participants performed better with visual cues. We conclude that roughness in AR can be systematically manipulated, but is vulnerable to perceptual interference from irrelevant inputs, where our work provides actionable insights for implementing optimized and adaptive AR/VR interfaces.

neuroscience↗

Structural and functional MRI signatures of Gambling Disorder: a case-control study

Gambling disorder (GD) is a behavioural addiction that may help identify addiction-related neural features without the direct neurobiological effects of a primary substance of dependence. We examined regional grey matter volume (GMV) and resting-state functional connectivity (rsFC) in the same well-characterised sample. Eighteen men with GD and 21 matched healthy controls underwent high-resolution structural and resting-state functional MRI. GMV was quantified across 214 cortical and subcortical regions, and seed-based rsFC analyses focused on striatal subdivisions and mesocorticolimbic regions. Group differences were evaluated using permutation testing and cluster-corrected mixed-effects modelling. GD was associated with lower GMV in the ventromedial prefrontal cortex, orbitofrontal regions and other cortical and subcortical areas, alongside higher GMV in a subset of limbic and default-mode regions. Participants with GD also showed lower connectivity between the limbic striatum and the hippocampus, thalamus and putamen. In exploratory analyses, somatomotor connectivity was positively associated with gambling severity (Problem Gambling Severity Index: Spearman's rho = 0.71, p = 0.003, false-discovery-rate-adjusted q = 0.016). Structural and functional findings overlapped spatially in regions associated with valuation, memory, reward and habit formation, but regional GMV did not mediate group differences in rsFC. These findings are broadly consistent with corticostriatal models of GD and identify candidate circuit-level differences for independent replication. Larger, more diverse and longitudinal samples are required to establish their reproducibility, temporal direction and clinical relevance.

neuroscience↗