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bioRxiv · 10.64898/2026.03.06.709938

AQuA2-Cloud: a web platform for fluorescence bioimaging activity analysis

Bright, M.·Mi, X.·Duarte, D.·Carey, E.·Lyu, B.·Wang, Y.·Nimmerjahn, A.·Yu, G.
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Abstract

BackgroundAdvanced biological imaging analysis platforms such as Activity Quantification and Analysis (AQuA2) enable accurate spatiotemporal activity analysis across diverse cell populations within many species. These tools are increasingly important for investigating cellular signaling dynamics and behavior. However, despite advances in the accuracy and species capability of AQuA2, it remains computationally demanding for analysis of long time-series datasets and requires all users to maintain a MATLAB license, which may limit accessibility and large-scale deployment. ResultsTo address these limitations, we have designed and made available AQuA2-Cloud, a portable software stack and web platform developed as an improvement and further evolution of AQuA2. This container-deployable system permits multi-user cloud-based high accuracy activity quantification with intuitive workflows, export of analysis data and project files, and comparable processing times. The platform offers integrated features such as in-browser analysis control interfaces, asynchronous program state control, multiple users and user management, support for unreliable connections, file uploading and downloading via web browsers and File Transfer Protocol, and centralized organization of analysis output. ConclusionAQuA2-Cloud constitutes a cloud-native solution for laboratories or research groups seeking to centralize analysis of spatiotemporal biological imaging datasets while reducing software installation and licensing barriers for end users. The platform enables researchers with minimal technical expertise to perform advanced bioimaging analysis through standard web browsers while maintaining the analytical capabilities of AQuA2. AQuA2-Cloud source code, deployment procedures, and documentation are freely available at (https://github.com/yu-lab-vt/AQuA2-Cloud).

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Bright, M., Mi, X., Duarte, D., Carey, E., Lyu, B., Wang, Y., Nimmerjahn, A., Yu, G.. 2026-03-10. AQuA2-Cloud: a web platform for fluorescence bioimaging activity analysis. https://doi.org/10.64898/2026.03.06.709938

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