Adenine Base Editing Potently Suppresses Hepatitis B Surface Antigen Expression and Inhibits Hepatitis D Virus Release

Kumar, A.; Combe, E.; Smekalova, E. M.; Dejene, S.; Leboeuf, D.; Chen, C.-Y.; Mougene, L.; Deleume, M.; Scholtes, C.; Plissonnier, M.-L.; Grand, X.; Martinez, M. G.; Ciaramella, G.; Gregoire, F.; Packer, M. S.; Testoni, B.; Zoulim, F.

doi:10.64898/2026.02.06.704371

bioRxiv · 10.64898/2026.02.06.704371

Adenine Base Editing Potently Suppresses Hepatitis B Surface Antigen Expression and Inhibits Hepatitis D Virus Release

Kumar, A.·Combe, E.·Smekalova, E. M.·Dejene, S.·Leboeuf, D.·Chen, C.-Y.·Mougene, L.·Deleume, M.·Scholtes, C.·Plissonnier, M.-L.·Grand, X.·Martinez, M. G.·Ciaramella, G.·Gregoire, F.·Packer, M. S.·Testoni, B.·Zoulim, F.

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Abstract

Background and AimsNovel antiviral approaches capable of permanently inactivating the intrahepatic HBV DNA reservoir, the covalently closed circular DNA (cccDNA) and HBV DNA integrated into the host genome, are urgently needed. This study evaluated adenine base editing as a strategy to disrupt HBV replication by introducing mutations in the overlapping HBs/polymerase open reading frame (ORF). MethodsAn adenine base editor (ABE) and 3 guide RNAs (gS1-gS3) were designed to introduce missense mutations within the HBs/polymerase ORF. ABE mRNA and individual gRNAs were co-transfected into HBV-infected HepG2-hNTCP cells and primary human hepatocytes. Antiviral efficacy was further assessed in HepG2.2.15 and PLC/PRF/5 cells harboring integrated HBV DNA. In vivo, lipid nanoparticles (LNP)-mediated delivery of ABE mRNA and gRNAs was evaluated in HBVcircle DNA-transduced mice and in HBV-infected human liver-chimeric mice. The impact of HBs editing on hepatitis D virus (HDV) release was assessed using PLC/PRF/5 and Huh7 cell-based HDV replication models. ResultsAdenine base editing efficiently reduced HBsAg production and HBV replication in vitro by targeting both cccDNA and integrated HBV DNA. A single LNP injection of ABE-gS2 resulted in undetectable HBsAg in HBVcircle mice, while two injections achieved a 90% reduction in serum HBsAg in HBV-infected human liver chimeric mice. HBV DNA replication was also inhibited in vivo. Furthermore, HBs ORF base editing markedly suppressed HDV release in vitro. ConclusionsAdenine base editing of the HBs ORF effectively impairs HBV replication and HBsAg production in vitro and in vivo and concomitantly inhibits HDV release, highlighting its therapeutic potential.

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Kumar, A., Combe, E., Smekalova, E. M., Dejene, S., Leboeuf, D., Chen, C.-Y., Mougene, L., Deleume, M., Scholtes, C., Plissonnier, M.-L., Grand, X., Martinez, M. G., Ciaramella, G., Gregoire, F., Packer, M. S., Testoni, B., Zoulim, F.. 2026-02-06. Adenine Base Editing Potently Suppresses Hepatitis B Surface Antigen Expression and Inhibits Hepatitis D Virus Release. https://doi.org/10.64898/2026.02.06.704371

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