CaMKIIα holoenzymes self-organize into worm-like mesoscale clusters

Suzuki, T.; Sumikama, T.; Matsushima, K.; Hasegawa, K.; Sumino, A.; Umeda, K.; Kodera, N.; Das, T.; Beta, C.; Murakoshi, H.; Shibata, M.

doi:10.64898/2026.01.21.700754

bioRxiv · 10.64898/2026.01.21.700754

CaMKIIα holoenzymes self-organize into worm-like mesoscale clusters

Suzuki, T.·Sumikama, T.·Matsushima, K.·Hasegawa, K.·Sumino, A.·Umeda, K.·Kodera, N.·Das, T.·Beta, C.·Murakoshi, H.·Shibata, M.

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Abstract

Ca2+/calmodulin-dependent protein kinase II (CaMKII) is highly enriched in dendritic spines at concentrations comparable to those of cytoskeletal proteins and plays a central role in synaptic plasticity. During long-term potentiation (LTP), CaMKII further accumulates in spines. However, the mechanisms governing its higher-order organization remain poorly understood. Here, we use high-speed atomic force microscopy to visualize inter-holoenzyme interaction of CaMKII at mesoscopic scales (5-500 nm). Under freely diffusible conditions, CaMKII holoenzymes do not form stable clusters. In contrast, when spatially confined, they assemble into worm-like chain clusters mediated by kinase-domain interactions. These clusters expand upon activation, concomitant with the dissociation of the regulatory segment. Notably, the CaMKII P212L mutant associated with neurodevelopmental disorders, forms extensive clusters even in the basal state. Together, our findings demonstrate that CaMKII-CaMKII interactions drive mesoscale cluster formation and that precise regulation of cluster size and activation-dependent growth might be critical for synaptic signaling.

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Suzuki, T., Sumikama, T., Matsushima, K., Hasegawa, K., Sumino, A., Umeda, K., Kodera, N., Das, T., Beta, C., Murakoshi, H., Shibata, M.. 2026-01-23. CaMKIIα holoenzymes self-organize into worm-like mesoscale clusters. https://doi.org/10.64898/2026.01.21.700754

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