Developing High-Yield and Safe Therapeutic EVs by Ablating Tissue Factor-Mediated Toxicity

Luo, Q.; Li, X.; Yang, M.; Xu, S.; Jiang, T.; Xia, J.; Ding, J.; Qin, X.; Zhao, T.

doi:10.64898/2025.12.25.696171

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bioRxiv · 10.64898/2025.12.25.696171

Developing High-Yield and Safe Therapeutic EVs by Ablating Tissue Factor-Mediated Toxicity

Luo, Q.·Li, X.·Yang, M.·Xu, S.·Jiang, T.·Xia, J.·Ding, J.·Qin, X.·Zhao, T.

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Abstract

The clinical translation of extracellular vesicles (EVs) as next-generation drug delivery vehicles is currently stalled by two interrelated challenges: the difficulty of manufacturing EVs at an industrial scale ("the yield problem") and the risks of toxicity associated with systemic administration of high doses ("the safety ceiling"). In this comprehensive study, we present a two-pronged genetic engineering strategy to overcome these limitations. First, we discovered that overexpression of glycosylphosphatidylinositol (GPI)-anchored proteins, such as CD55 and CD59, significantly enhances EV production in HEK293T and Expi293F cells. By engineering a truncated CD55 variant (TR3) that retains the GPI-anchor but lacks functional domains, we developed the ExoBoost cell line, which boosts EVs yield by approximately 50-fold without altering vesicle morphology. Second, we observed acute toxicity in mice following intravenous administration of high-dose ExoBoost EVs, with symptoms resembling venous thromboembolism. Through comparative analysis of EVs derived from other cell types, including keratinocyte stem cells (KSCs) and mesenchymal stem cells (MSCs), we identified Tissue Factor (TF/F3) as the critical causative agent of this lethal response. Moreover, we completely abolished this toxicity by generating a F3-knockout cell line (ExoBoost2.0) using CRISPR/Cas9, thereby raising the safe dose to as high as 1.5E12 particles per mouse, as quantified by nano flow-cytometry (nFCM). Finally, using a novel CD46-nanoluciferase reporter system, we demonstrated that high-dose administration of these safe EVs saturates hepatic and splenic clearance pathways, leading to a dramatic increase of systemic EVs accumulation, particularly in hard-to-target tissues such as the brain ([~]10,000-fold) and muscle ([~]1,000-fold). Additionally, repeated high-dose administration of ExoBoost2.0 EVs did not upregulate inflammatory cytokines or production of IgG and IgM. In summary, these findings establish a scalable, safe, and highly biocompatible EVs platform, potentially revolutionizing the drug delivery system in clinical application.

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Luo, Q., Li, X., Yang, M., Xu, S., Jiang, T., Xia, J., Ding, J., Qin, X., Zhao, T.. 2025-12-25. Developing High-Yield and Safe Therapeutic EVs by Ablating Tissue Factor-Mediated Toxicity. https://doi.org/10.64898/2025.12.25.696171

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