Search bioRxiv⌕ Search

bioRxiv · 10.1101/772624

How flat can a horse be? Exploring 2D approximations of 3D crania in equids

Abstract

Quantitative analyses of morphological variation using geometric morphometrics are often performed on 2D photos of 3D structures. It is generally assumed that the error due to the flattening of the third dimension is negligible. However, despite hundreds of 2D studies, few have actually tested this assumption and none has done it on large animals, such as those typically classified as megafauna. We explore this issue in living equids, focusing on ventral cranial variation at both micro- and macro-evolutionary levels. By comparing 2D and 3D data, we found that size is well approximated, whereas shape is more strongly impacted by 2D inaccuracies, as it is especially evident in intra-specific analyses. The 2D approximation improves when shape differences are larger, as in macroevolution, but even at this level precise inter-individual similarity relationships are altered. Despite this, main patterns of sex, species and allometric variation in 2D were the same as in 3D, thus suggesting that 2D may be a source of noise that does not mask the main signal in the data. However, the problem is complex and any generalization premature. Morphometricians should therefore test the appropriateness of 2D using preliminary investigations in relation to the specific study questions in their own samples. We discuss whether this might be feasible using a reduced landmark configuration and smaller samples, which would save time and money. In an exploratory analysis, we found that in equids results seem robust to sampling, but become less precise and, with fewer landmarks, may slightly overestimate 2D inaccuracies.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Cardini, A., Chiappelli, M.. 2019-09-18. How flat can a horse be? Exploring 2D approximations of 3D crania in equids. https://doi.org/10.1101/772624

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

A baseline for aquatic parasite diversity in West African mangroves: host-parasite records, DNA barcodes, and an experimental design for future use

Macroparasites represent a major fraction of biodiversity and biomass in marine ecosystems, yet remain substantially underrepresented in ecological surveys and food-web models, particularly in the Global South. This study addresses this geographic bias by providing the first comprehensive ecological survey of macroparasite communities of fishes in a West African Marine Protected Area (MPA) and adjacent Open-Access Area (OAA) characterised by mangrove forests. We collected 5,020 parasite specimens from 10 fish and one crab species in the Saloum Delta, Senegal, identifying 27 parasite species across all major taxa. Our findings include 15 new records for Senegal of which 11 are also new for West Africa. Additionally, 64% of host-parasite combinations constitute new host records. We provide 208 DNA barcodes, offering the first molecular data for 31% of these species globally and establishing a reference library for future DNA metabarcoding efforts in the region. Using sample size-corrected biodiversity indices and mixed-model analyses, we detected significant variations in parasite infracommunities and component communities between the MPA and OAA, demonstrating the feasibility of using comparative study designs to monitor fisheries impacts on parasite diversity in the Saloum Delta. Furthermore, the identification of trophically transmitted parasites provided evidence of unstudied food-web connections, e.g. predator-prey linkages between fishes and higher-trophic-level definitive hosts including birds and elasmobranchs. By integrating morphological identification, molecular data, and archiving of voucher specimens into publicly accessible, curated collections, this study establishes a new baseline for marine parasite biodiversity in West Africa and provides a methodological blueprint for surveying understudied regions.

zoology↗

Sea slugs unplugged: Review of subpopulation sampling in phylogeographic studies of nudibranchs and their allies

Nudibranchs and other sea slugs include many cryptic species groups with unknown phenotypic and ecological diversity. How broadly and deeply should researchers sample those cryptic species pairs to capture the genetic variation within each species and potential adaptive differences between species? Fast and inexpensive surveys of genetic diversity that sample a single well-known locus across the geographical range ("phylogeography unplugged") have long been used to identify structured populations and guide choice of sampling localities for subsequent comparative genomic or phenotypic studies of the same species. Results from such studies might also be used to better understand the expected relationships between sampling and population structure in future comparative studies in other species (including many marine gastropods) for which an unplugged phylogeographic survey is not available or impractical. We reviewed analyses of molecular variance that used mitochondrial barcode sequences from marine sea slugs, and we asked whether there are characteristic patterns of subpopulation sampling that are associated with the magnitude and geographical scale of differentiation. We found wide variation in sampling designs: studies with both many and few samples discovered significant population differentiation or broadly similar distribution of haplotypes on both large and small spatial scales, in species from different higher taxonomic groups and oceans. We found two significant associations between sampling variables and population genetic variables, and we suggest using those associations to help guide (or understand the consequences of) sampling design in future studies.

zoology↗

A novel methodology for assessing reinforcement choice in primates under human care

Positive Reinforcement Training is a technique commonly employed in zoological collections to elicit a desired behaviour from an animal under human care. Typically, a food item is offered as a reward for performing that behaviour. Three non-human primate species (Mandrillus sphinx, Pan troglodytes, and Hylobates lar) were offered four different foods (banana, grape, apple, and sweet potato) in a series of choice experiments. Latent variable models were employed to investigate which foods were the best selection to use as reinforcement items. Results show that food preference varies between the three primate species. Pan troglodytes and H. lar showed strong preferences for grape and banana, whereas M. sphinx showed a very strong preference for sweet potato. This study indicates that foraging ecology might play an important part in fruit selection and preference in primates. The findings highlight that understanding a species' natural behaviour and dietary preferences is key to informing reinforcement and training decisions.

zoology↗