Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

Jarmusch, A. K.; Wang, M.; Aceves, C. M.; Advani, R. S.; Aguire, S.; Aksenov, A. A.; Aleti, G.; Aron, A. T.; Bauermeister, A.; Bolleddu, S.; Bouslimani, A.; Caraballo-Rodriguez, A. M.; Chaar, R.; Coras, R.; Elijah, E. O.; Ernst, M.; Gauglitz, J. M.; Gentry, E. C.; Husband, M.; Jarmusch, S. A.; Jones, K. L.; Kamenik, Z.; Le Gouellec, A.; Lu, A.; McCall, L.-I.; McPhail, K. L.; Meehan, M. J.; Melnik, A. V.; Menezes, R. C.; Montoya-Giraldo, Y. A.; Nguyen, N. H.; Nothias, L. F.; Nothias-Esposito, M.; Panitchpakdi, M.; Petras, D.; Quinn, R.; Sikora, N.; van der Hooft, J. J. J.; Vargas, F.; Vrbanac,

doi:10.1101/750471

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bioRxiv · 10.1101/750471

Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data

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Abstract

Metabolomics data are difficult to find and reuse, even in public repositories. We, therefore, developed the Reanalysis of Data User (ReDU) interface (https://redu.ucsd.edu/), a community- and data-driven approach that solves this problem at the repository scale. ReDU enables public data discovery and co- or re-analysis via uniformly formatted, publicly available MS/MS data and metadata in the Global Natural Product Social Molecular Networking Platform (GNPS), consistent with findable, accessible, interoperable, and reusable (FAIR) principles.1

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Jarmusch, A. K., Wang, M., Aceves, C. M., Advani, R. S., Aguire, S., Aksenov, A. A., Aleti, G., Aron, A. T., Bauermeister, A., Bolleddu, S., Bouslimani, A., Caraballo-Rodriguez, A. M., Chaar, R., Coras, R., Elijah, E. O., Ernst, M., Gauglitz, J. M., Gentry, E. C., Husband, M., Jarmusch, S. A., Jones, K. L., Kamenik, Z., Le Gouellec, A., Lu, A., McCall, L.-I., McPhail, K. L., Meehan, M. J., Melnik, A. V., Menezes, R. C., Montoya-Giraldo, Y. A., Nguyen, N. H., Nothias, L. F., Nothias-Esposito, M., Panitchpakdi, M., Petras, D., Quinn, R., Sikora, N., van der Hooft, J. J. J., Vargas, F., Vrbanac,. 2019-08-29. Repository-scale Co- and Re-analysis of Tandem Mass Spectrometry Data. https://doi.org/10.1101/750471

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