Engineering the smallest transcription factor: accelerated evolution of a 63-amino acid peptide dual activator-repressor

Brodel, A. K.; Rodrigues, R.; Jaramillo, A.; Isalan, M.

doi:10.1101/725739

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bioRxiv · 10.1101/725739

Engineering the smallest transcription factor: accelerated evolution of a 63-amino acid peptide dual activator-repressor

Brodel, A. K.·Rodrigues, R.·Jaramillo, A.·Isalan, M.

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Abstract

Transcription factors control gene expression in all life. This raises the question of what is the smallest protein that can support such activity. In nature, Cro from bacteriophage {lambda} is the smallest known repressor (66 amino acids; a.a.) but activators are typically much larger (e.g. {lambda} cI, 237 a.a.). Indeed, previous efforts to engineer a minimal activator from Cro resulted in no activity in vivo. In this study, we show that directed evolution results in a new Cro activator-repressor that functions as efficiently as {lambda} cI, in vivo. To achieve this, we develop Phagemid-Assisted Continuous Evolution: PACEmid. We find that a peptide as small as 63-a.a. functions efficiently as an activator and/or repressor. To our knowledge, this is the smallest protein gene regulator reported to date, highlighting the capacity of transcription factors to evolve from very short peptide sequences.

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Brodel, A. K., Rodrigues, R., Jaramillo, A., Isalan, M.. 2019-08-05. Engineering the smallest transcription factor: accelerated evolution of a 63-amino acid peptide dual activator-repressor. https://doi.org/10.1101/725739

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