Quantitative three-dimensional nondestructive imaging of whole anaerobic ammonium-oxidizing bacteria

Peng, M.-W.; Guan, Y.; Liu, J.-H.; Chen, L.; Wang, H.; Xie, Z.-Z.; Li, H.-Y.; Chen, Y.-P.; Liu, P.; Yan, P.; Guo, J.-S.; Liu, G.; Shen, Y.; Fang, F.

doi:10.1101/709188

bioRxiv · 10.1101/709188

Quantitative three-dimensional nondestructive imaging of whole anaerobic ammonium-oxidizing bacteria

Peng, M.-W.·Guan, Y.·Liu, J.-H.·Chen, L.·Wang, H.·Xie, Z.-Z.·Li, H.-Y.·Chen, Y.-P.·Liu, P.·Yan, P.·Guo, J.-S.·Liu, G.·Shen, Y.·Fang, F.

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Abstract

Anaerobic ammonium-oxidizing (anammox) bacteria play a key role in the global nitrogen cycle and the treatment of nitrogenous wastewater. These functions are closely related to the unique biophysical structure of anammox bacteria. However, the research on the biophysical ultrastructure of intact anammox bacteria is lacking. In this study, in-situ three-dimensional nondestructive ultrastructure imaging of whole anammox cell was performed using synchrotron soft X-ray nano-computed tomography and the total variation-based simultaneous algebraic reconstruction technique (TV-SART). Statistical and quantitative analyses of the ultrastructures of intact anammox bacteria were performed. The linear absorption coefficient values of the ultrastructures of anammox bacteria were calculated and the asymmetric structure of the anammox bacteria was quantified. On this basis, the shape adaptation of the anammox bacteria responses to Fe2+ were explored, and the underlying regulation mechanism of Fe2+ on anammox bacteria was explored. Furthermore, a promising method to study the biophysical properties of cells in different environments and engineering processes was proposed.\n\nGraphical Abstract\n\nO_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=96 SRC=\"FIGDIR/small/709188v1_ufig1.gif\" ALT=\"Figure 1\">\nView larger version (23K):\norg.highwire.dtl.DTLVardef@1994e5eorg.highwire.dtl.DTLVardef@1e80137org.highwire.dtl.DTLVardef@a7f418org.highwire.dtl.DTLVardef@8a77e5_HPS_FORMAT_FIGEXP M_FIG C_FIG Statement of SignificanceAnaerobic ammonium-oxidizing (anammox) bacteria play key role in global nitrogen cycle, and this physiological function depends on the unique morphology of anammox bacteria. In this study, synchrotron soft-X ray imaging technique coupled with simultaneous algebraic reconstruction technique with total variation (SART-TV) algorithm were performed to quantify the three-dimensional ultrastructure of the whole anammox bacteria for the first time. On this basis, the shape adaptation and mechanism of the anammox bacteria responses to Fe2+ were explored and a promising method for detecting the physiological properties of anammox bacteria was proposed.

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Peng, M.-W., Guan, Y., Liu, J.-H., Chen, L., Wang, H., Xie, Z.-Z., Li, H.-Y., Chen, Y.-P., Liu, P., Yan, P., Guo, J.-S., Liu, G., Shen, Y., Fang, F.. 2019-07-22. Quantitative three-dimensional nondestructive imaging of whole anaerobic ammonium-oxidizing bacteria. https://doi.org/10.1101/709188

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