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bioRxiv · 10.1101/701391

SINATRA: A Sub-Image Analysis Pipeline for Selecting Features that Differentiate Classes of 3D Shapes

Wang, B.·Sudijono, T.·Kirveslahti, H.·Gao, T.·Boyer, D. M.·Mukherjee, S.·Crawford, L.
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Abstract

The recent curation of large-scale databases with 3D surface scans of shapes has motivated the development of tools that better detect global patterns in morphological variation. Studies which focus on identifying differences between shapes have been limited to simple pairwise comparisons and rely on pre-specified landmarks (that are often known). We present SINATRA: the first statistical pipeline for analyzing collections of shapes without requiring any correspondences. Our novel algorithm takes in two classes of shapes and highlights the physical features that best describe the variation between them. We use a rigorous simulation framework to assess our approach. Lastly, as a case study, we use SINATRA to analyze mandibular molars from four different suborders of primates and demonstrate its ability recover known morphometric variation across phylogenies.

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Wang, B., Sudijono, T., Kirveslahti, H., Gao, T., Boyer, D. M., Mukherjee, S., Crawford, L.. 2019-07-14. SINATRA: A Sub-Image Analysis Pipeline for Selecting Features that Differentiate Classes of 3D Shapes. https://doi.org/10.1101/701391

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