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bioRxiv · 10.1101/661132

Parallel Capsule Net for Ischemic Stroke Segmentation

Sharique, M.·Bondi, U. P.·KrishnaKumar, R.·Sridar, P.·krishnan, R. S. R.
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Abstract

Stroke is one of the leading causes of disability. Segmentation of ischemic stroke could help in planning an optimal treatment. Currently, radiologists use manual segmentation, which can often be time-consuming, laborious and error-prone. Automatic segmentation of ischemic stroke in MRI brain images is a challenging problem due to its small size, multiple occurrences and the need to use multiple image modalities. In this paper, we propose a new architecture for image segmentation, called Parallel Capsule Net, which uses max pooling in every parallel pathways along with dense connections between the parallel layers. We hypothesise that the spatial information lost due to max pooling in these layers can be retrieved by the use of such dense connections. In order to combine the information encoded by the parallel layers, outputs of the layers are concatenated before upsampling. We also propose the use of a modified loss function which consists of a regional term (Generalized Dice loss + Focal Loss) and a boundary term (Boundary loss) to address the problem of class imbalance which is prevalent in medical images. We achieved a competitive Dice score of 0.754, on ISLES SISS data set, compared to a score of 0.67 reported in earlier studies. We also obtained a Dice score of 0.902 with another popular data set, ATLAS. The proposed parallel capsule net can be extended to other similar medical image segmentation problems.

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Sharique, M., Bondi, U. P., KrishnaKumar, R., Sridar, P., krishnan, R. S. R.. 2019-06-06. Parallel Capsule Net for Ischemic Stroke Segmentation. https://doi.org/10.1101/661132

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