A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides

Nora, L. C.; Wehrs, M.; Kim, J.; Cheng, J.-F.; Tarver, A.; Simmons, B. A.; Magnuson, J.; Harmon-Smith, M.; Silva-Rocha, R.; Gladden, J. M.; Mukhopadhyay, A.; Skerker, J. M.; Kirby, J.

doi:10.1101/592774

bioRxiv · 10.1101/592774

A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides

Nora, L. C.·Wehrs, M.·Kim, J.·Cheng, J.-F.·Tarver, A.·Simmons, B. A.·Magnuson, J.·Harmon-Smith, M.·Silva-Rocha, R.·Gladden, J. M.·Mukhopadhyay, A.·Skerker, J. M.·Kirby, J.

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Abstract

BackgroundRhodosporidium toruloides is a promising host for the production of bioproducts from lignocellulosic biomass. A key prerequisite for efficient pathway engineering is the availability of robust genetic tools and resources. However, there is a lack of characterized promoters to drive expression of heterologous genes for strain engineering in R. toruloides.\n\nResultsOur data describes a set of native R. toruloides promoters, characterized over time in four different media commonly used for cultivation of this yeast. The promoter sequences were selected using transcriptional analysis and several of them were found to drive expression bidirectionally. We measured promoter expression strength by flow cytometry using a dual fluorescent reporter system. From these analyses, we found a total of 20 constitutive promoters (12 monodirectional and 8 bidirectional) of potential value for genetic engineering of R. toruloides.\n\nConclusionsWe present a list of robust and constitutive, native promoters to facilitate genetic engineering of R. toruloides. This set of thoroughly characterized promoters significantly expands the range of engineering tools available for this yeast and can be applied in future metabolic engineering studies.

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Nora, L. C., Wehrs, M., Kim, J., Cheng, J.-F., Tarver, A., Simmons, B. A., Magnuson, J., Harmon-Smith, M., Silva-Rocha, R., Gladden, J. M., Mukhopadhyay, A., Skerker, J. M., Kirby, J.. 2019-03-30. A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides. https://doi.org/10.1101/592774

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