Comparative analyses of metabolic pathways in mycobacteria: Insights into the identification and characterisation of new drug targets in M. tuberculosis, M. leprae and M. abscessus

Bannerman, B. P.; Vedithi, S. C.; Julvez, J.; Torres, P.; Waman, V. P.; Munir, A.; Mendes, V.; Malhotra, S.; Skwark, M. J.; Oliver, S. G.; Blundell, T. L.

doi:10.1101/535856

bioRxiv · 10.1101/535856

Comparative analyses of metabolic pathways in mycobacteria: Insights into the identification and characterisation of new drug targets in M. tuberculosis, M. leprae and M. abscessus

Bannerman, B. P.·Vedithi, S. C.·Julvez, J.·Torres, P.·Waman, V. P.·Munir, A.·Mendes, V.·Malhotra, S.·Skwark, M. J.·Oliver, S. G.·Blundell, T. L.

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Abstract

Three related mycobacteria are the cause of widespread infections in man and are the focus of intense research and drug-discovery efforts in the face of growing antimicrobial resistance. Mycobacterium tuberculosis, the causative agent of tuberculosis, is currently one of the top ten causes of death in the world according to WHO; M. abscessus, a group of non-tuberculous mycobacteria causes lung infections and other opportunistic infections in humans; and M. leprae, the causative agent of leprosy, remains endemic in tropical countries. There is an urgent need to design alternatives to conventional treatment strategies, due to the increase in resistance to standard antibacterials. In this study, we present a comparative analysis of chokepoint and essentiality datasets that will provide insight into the development of new treatment regimes. We illustrate the key metabolic pathways shared between these three organisms and identify drug targets with a wide metabolic impact that are common to the three species. We demonstrate that 72% of the chokepoint enzymes are proteins essential to Mycobacterium tuberculosis. We show also that 78% of the drug targets, prioritized based on their presence in multiple paths on the metabolic network, are present in pathways shared by M. tuberculosis, M. leprae and M. abscessus, including biosynthesis of amino acids, carbohydrates, cell structures, fatty acid and lipid biosynthesis. A further 17% is found in the prioritised pathways shared between M. tuberculosis and M. abscessus. We have performed comparative structure modelling of potential drug targets identified using our analysis in order to assess druggability and demonstrate the importance of chokepoint analysis in terms of drug target identification. AUTHOR SUMMARYComputer simulation studies to design new drugs against mycobacteria

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Bannerman, B. P., Vedithi, S. C., Julvez, J., Torres, P., Waman, V. P., Munir, A., Mendes, V., Malhotra, S., Skwark, M. J., Oliver, S. G., Blundell, T. L.. 2019-01-31. Comparative analyses of metabolic pathways in mycobacteria: Insights into the identification and characterisation of new drug targets in M. tuberculosis, M. leprae and M. abscessus. https://doi.org/10.1101/535856

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