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bioRxiv · 10.1101/515676

EK-DRD: a comprehensive database for drug repositioning inspired by experimental knowledge

Zhao, C.·Dai, X.·LI, Y.·Guo, Q.·Zhang, J.·Zhang, X.·Wang, L.
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Abstract

SummaryDrug repositioning, or the identification of new indications for approved therapeutic drugs, has gained substantial traction with both academics and pharmaceutical companies because it reduces the cost and duration of the drug development pipeline and it reduces the likelihood of unforeseen adverse events. So far, there has not been a systematic effort to identify such opportunities, in part because of the lack of a comprehensive resource for an enormous amount of unsystematic drug repositioning information to support scientists who could benefit from this endeavor. To address this challenge, we developed a new database, Experimental Knowledge-Based Drug Repositioning Database (EK-DRD) by using text and data mining, as well as manual curation. EK-DRD contains experimentally validated drug repositioning annotation for 1861 FDA-approved and 102 withdrawn small molecule drugs. Annotation was done at four levels, using 70,212 target assay records, 3999 cell assay records, 585 organism assay records, and 8910 clinical trial records. Additionally, approximately 1799 repositioning protein or target sequences coupled with 856 related diseases and 1332 pathways are linked to the drug entries. Our web-based software displays a network for integrative relationships between drugs, their repositioning targets, and related diseases. The database is fully searchable and supports extensive text, sequence, chemical structure, and relational query searches.\n\nAvailabilityEK-DRD is freely available at http://www.idruglab.com/drd/index.php.\n\nContactlingwang@scut.edu.cn.

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Zhao, C., Dai, X., LI, Y., Guo, Q., Zhang, J., Zhang, X., Wang, L.. 2019-01-10. EK-DRD: a comprehensive database for drug repositioning inspired by experimental knowledge. https://doi.org/10.1101/515676

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