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bioRxiv · 10.1101/499558

G-OnRamp: A Galaxy-based platform for creating genome browsers for collaborative genome annotation

Liu, Y.·Sargent, L.·Leung, W.·Elgin, S. C. R.·Goecks, J.
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Abstract

SummaryG-OnRamp provides a user-friendly, web-based platform for collaborative, end-to-end annotation of eukaryotic genomes using UCSC Assembly Hubs and JBrowse/Apollo genome browsers with evidence tracks derived from sequence alignments, ab initio gene predictors, RNA-Seq data, and repeat finders. Researchers can use the G-OnRamp output to visualize large genomics datasets, and can utilize the output to drive collaborative genome annotation projects in both research and educational settings.\n\nAvailability and ImplementationThe G-OnRamp virtual machine images and tutorials are freely available on the G-OnRamp web site (http://g-onramp.org/deployments). The G-OnRamp source code is freely available under an Academic Free License version 3.0 through the goeckslab GitHub repository (https://github.com/goeckslab).\n\nContactgoecksj@ohsu.edu\n\nSupplementary information:

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Liu, Y., Sargent, L., Leung, W., Elgin, S. C. R., Goecks, J.. 2018-12-18. G-OnRamp: A Galaxy-based platform for creating genome browsers for collaborative genome annotation. https://doi.org/10.1101/499558

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