Search bioRxivSearch

bioRxiv · 10.1101/450031

Timing and causes of the distribution pattern of Oncomelania hupensis estimated by molecular and geologic data

Abstract

AbstractAs the only intermediate host of Schistosoma japonicum, Oncomelania hupensis plays an irreplaceable role in the prevalence of schistosomiasis japonica. Several living subspecies of Oncomelania hupensis are found in Asia, especially in China, Japan,the Philippines, and Sulawesi of Indonesia. The existing geographical distribution pattern of O. hupensis has been influenced by geological events. This study used existing mitochondrial gene data for O. hupensis in the GenBank database and the molecular clock method to estimate the divergence time of each subspecies of O. hupensis. For the first time, the timing and causes of the distribution pattern of the different O. hupensis subspecies were studied by combining molecular data with data on geologic events. The results showed that the uplift and isolation of the Qinghai-Tibet Plateau caused Oncomelania hupensis robertsoni to differentiate 4.76 Ma(Million anniversary), while Oncomelania hupensis guangxiensis was affected by the third Himalayan orogenic movement, differentiating 1.10 Ma. Oncomelania hupensis nosophora was influenced by the formation of the Yonaguni Strait and diverged 1.43 Ma. Influenced by ice ages and interglacial periods, Oncomelania hupensis tangi and Oncomelania hupensis formosana diverged 0.57 Ma. The link of the ancient Yangtze River promoted the spread of O. hupensis to the middle and lower reaches of the Yangtze River, and the developed water network facilitated gene exchange among Oncomelania hupensis hupensis in the area. Eventually, 0.62 Ma, O. h. hupensis differentiated.\n\nAuthor summaryPhylogenetic analysis of Pomatiopsidae species showed that Oncomelania was isolated from other genera and clustered independently in phylogenetic trees. Further analysis of the species Oncomelania hupensis and its subspecies was performed. The snail species O. hupensis has multiple subspecies that exhibit certain differences. These subspecies are distributed across Asia, from Chinas Yunnan Province in the west to Japan in the east and south to the Philippines and Indonesia. In addition, the subspecies are widespread in the middle and lower reaches of the Yangtze River in China, and the distribution ranges of the different subspecies do not overlap. The formation of this distribution pattern of each subspecies of O. hupensis has a profound impact on the prevalence of Schistosoma japonicum. Therefore, the authors analyzed molecular data and geological historical events to investigate the timing and causes of the distribution pattern of each subspecies of O. hupensis.

Explore related subjects

Keep this discovery

BibTeXRIS

Ji, W.-b., Xu, S.-x., Bai, J., Cui, Y.-y., Zhou, X.-m., Zou, J.-x.. 2018-10-22. Timing and causes of the distribution pattern of Oncomelania hupensis estimated by molecular and geologic data. https://doi.org/10.1101/450031

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Geometry of antigenic evolution improves influenza vaccine selection

Anticipating antigenic evolution is essential for selecting effective seasonal influenza A/H3N2 vaccine strains. To this end, we integrated hemagglutination-inhibition and neutralization titers spanning 2002 to 2025 into a unified Bayesian antigenic map. The map resolves twelve antigenic clusters advancing in discrete steps, with several clusters co-circulating in most seasons. In 15 of 21 seasons, the WHO-recommended vaccine belonged to an earlier cluster than the dominant circulating cluster. The direction of each vaccine update relative to recent viral drift predicted vaccine effectiveness one season ahead in out-of-sample forecasts. Antigenic distance, the conventional measure of vaccine-virus match, was weakly associated with effectiveness until update direction was accounted for. Retrospectively ranking candidate strains by predicted effectiveness would have selected a strain predicted to outperform the WHO recommendation in every season, raising mean predicted effectiveness by 10 percentage points.

evolutionary biology

Evolutionary replay of duplicate-gene retention across independent whole-genome duplications

Whole-genome duplications repeatedly expose ancestral gene lineages to the same broad evolutionary outcome-retention or loss of duplicated copies-but it remains unclear whether this history replays similarly across evolutionary scales. We placed duplicate retention in shared hierarchical orthologous-group coordinates and compared percentile ranks defined within each event-wide mapped universe. Three independent angiosperm whole-genome duplications showed reproducible replay (global rank effect T-replay = 0.210, bootstrap 95% confidence interval 0.172-0.248; permutation P = 1/100,001). A plant reference-panel score specified before target outcomes were examined predicted retention after the Apple/Pear duplication ({rho} = 0.169, n = 373). Deep transfer was heterogeneous: the teleost-genome-duplication estimate was positive but unresolved ({rho} = 0.107, n = 151, 95% confidence interval -0.050 to 0.260), whereas transfer to the ancient budding-yeast whole-genome duplication (yeast WGD) was supported ({rho} = 0.280, n = 186). Independently reconstructed animal outcomes also replayed between teleost and Stylommatophora duplications (r = 0.226, n = 146, P = 0.00326), although the effect remained below a prespecified strong-effect threshold. A strict plant-animal comparison was limited to 25 deeply one-to-one lineages and was unresolved (r = 0.033, 95% confidence interval -0.303 to 0.340). Thus, ancestral gene-lineage identity contributes reproducibly to duplicate retention after independent whole-genome duplications, but replay is structured by evolutionary lineage and modified by event-specific history rather than governed by one universal gene-fate ranking.

evolutionary biology

A Hymenoptera-restricted gene mediating ant castes co-opts deeply conserved machinery to control organ size

Lineage-specific genes are widespread and have been implicated as phenotypic innovation inducers, but how they acquire complex developmental functions remains poorly understood. Ant queens and workers develop dramatically different organ sizes from identical genomes under juvenile hormone (JH) control, yet the molecular effectors translating JH signalling into caste-specific organ growth remain unknown. Here we identify torch, a Hymenoptera-restricted gene, as the most consistently gyne-biased and JH-responsive gene across 68 ant species. Knockdown of torch in virgin queens of Monomorium pharaonis produces a worker-like, multi-organ growth-restricted phenotype. Mechanistically, torch harbours an E-box-like motif activated by the JH receptor Gce-Tai and acts as a GA-repeat-binding transcription factor that regulates Hippo signalling, the deeply conserved organ-size control pathway in animals. Expressing torch heterologously in mice and a growth-restricted Drosophila background shows that the gene retained its general growth-promoting activity across more than 700 million years of animal evolution in lineages that lack the gene, establishing that its function is mediated through conserved rather than ant-specific machinery. A lineage-specific gene can therefore acquire complex morphogenetic function by co-opting ancient organ-size circuitry, providing a general route by which novel genes can drive phenotypic innovation.

evolutionary biology