Comparative genetic architectures of schizophrenia in East Asian and European populations

Lam, M.; Chen, C.-Y.; Li, Z.; Martin, A.; Bryois, J.; Ma, X.; Gaspar, H.; Ikeda, M.; Benyamin, B.; Brown, B.; Liu, R.; Zhou, W.; Huan, L.; Kamatani, Y.; Kim, S.-W.; Kubo, M.; Kusumawardhani, A.; Liu, C.-M.; Ma, H.; Periyasamy, S.; Takahashi, A.; Wang, Q.; Xu, Z.; Yu, H.; Zhu, F.; Psychiatric Genomics Consortium - Schizophrenia Working Group,; Indonesia Schizophrenia Consortium,; Genetic REsearch on schizophreniA neTwork-China and Netherland (GREAT-CN),; Chen, W.; Faraone, S.; Glatt, S.; He, L.; Hyman, S.; Hwu, H.-G.; Li, T.; McCarroll, S.; Neale, B.; Sklar, P.; Wildenauer, D.; Yu, X.; Zh

doi:10.1101/445874

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bioRxiv · 10.1101/445874

Comparative genetic architectures of schizophrenia in East Asian and European populations

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Abstract

Author summarySchizophrenia is a severe psychiatric disorder with a lifetime risk of about 1% world-wide. Most large schizophrenia genetic studies have studied people of primarily European ancestry, potentially missing important biological insights. Here we present a study of East Asian participants (22,778 schizophrenia cases and 35,362 controls), identifying 21 genome-wide significant schizophrenia associations in 19 genetic loci. Over the genome, the common genetic variants that confer risk for schizophrenia have highly similar effects in those of East Asian and European ancestry (rg=0.98), indicating for the first time that the genetic basis of schizophrenia and its biology are broadly shared across these world populations. A fixed-effect meta-analysis including individuals from East Asian and European ancestries revealed 208 genome-wide significant schizophrenia associations in 176 genetic loci (53 novel). Trans-ancestry fine-mapping more precisely isolated schizophrenia causal alleles in 70% of these loci. Despite consistent genetic effects across populations, polygenic risk models trained in one population have reduced performance in the other, highlighting the importance of including all major ancestral groups with sufficient sample size to ensure the findings have maximum relevance for all populations.

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Lam, M., Chen, C.-Y., Li, Z., Martin, A., Bryois, J., Ma, X., Gaspar, H., Ikeda, M., Benyamin, B., Brown, B., Liu, R., Zhou, W., Huan, L., Kamatani, Y., Kim, S.-W., Kubo, M., Kusumawardhani, A., Liu, C.-M., Ma, H., Periyasamy, S., Takahashi, A., Wang, Q., Xu, Z., Yu, H., Zhu, F., Psychiatric Genomics Consortium - Schizophrenia Working Group,, Indonesia Schizophrenia Consortium,, Genetic REsearch on schizophreniA neTwork-China and Netherland (GREAT-CN),, Chen, W., Faraone, S., Glatt, S., He, L., Hyman, S., Hwu, H.-G., Li, T., McCarroll, S., Neale, B., Sklar, P., Wildenauer, D., Yu, X., Zh. 2018-10-17. Comparative genetic architectures of schizophrenia in East Asian and European populations. https://doi.org/10.1101/445874

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