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bioRxiv · 10.1101/300947

FESTA: Flexible Exon-based Splicing and Transcription Annotation

Rago, A.·Colbourne, J. K.
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Abstract

We introduce FESTA, an R based algorithm that allows detection of alternative splicing based on experiment-specific exon expression data. FESTA disentangles alternative splicing signal from whole-gene transcription, facilitating the discovery and characterization of novel regulatory events even in the absence of transcript annotations or paired-end data. We also include customization options to increase its applicability on different platforms and experimental designs as well as a tool for the conversion from transcript expression to inclusion ratios.

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Rago, A., Colbourne, J. K.. 2018-04-17. FESTA: Flexible Exon-based Splicing and Transcription Annotation. https://doi.org/10.1101/300947

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