Large-scale neuroimaging and genetic study reveals genetic architecture of brain white matter microstructure

Zhao, B.; Zhang, J.; Ibrahim, J.; Santelli, R.; Li, Y.; Li, T.; Shan, Y.; Zhu, Z.; Zhou, F.; Liao, H.; Nichols, T.; Thompson, P.; Zhu, H.

doi:10.1101/288555

bioRxiv · 10.1101/288555

Large-scale neuroimaging and genetic study reveals genetic architecture of brain white matter microstructure

Zhao, B.·Zhang, J.·Ibrahim, J.·Santelli, R.·Li, Y.·Li, T.·Shan, Y.·Zhu, Z.·Zhou, F.·Liao, H.·Nichols, T.·Thompson, P.·Zhu, H.

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Abstract

Microstructural changes of white matter (WM) tracts are known to be associated with various neuropsychiatric disorders/diseases. Heritability of structural changes of WM tracts has been examined using diffusion tensor imaging (DTI) in family-based studies for different age groups. The availability of genetic and DTI data from recent large population-based studies offers opportunity to further improve our understanding of genetic contributions. Here, we analyzed the genetic architecture of WM tracts using DTI and single-nucleotide polymorphism (SNP) data of unrelated individuals in the UK Biobank (n [~] 8000). The DTI parameters were generated using the ENIGMA-DTI pipeline. We found that DTI parameters are substantially heritable on most WM tracts. We observed a highly polygenic or omnigenic architecture of genetic influence across the genome as well as the enrichment of SNPs in active chromatin regions. Our bivariate analyses showed strong genetic correlations for several pairs of WM tracts as well as pairs of DTI parameters. We performed voxel-based analysis to illustrate the pattern of genetic effects on selected parts of the tract-based spatial statistics skeleton. Comparing the estimates from the UK Biobank to those from small population-based studies, we illustrated that sufficiently large sample size is essential for genetic architecture discovery in imaging genetics. We confirmed this finding with a simulation study.

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Zhao, B., Zhang, J., Ibrahim, J., Santelli, R., Li, Y., Li, T., Shan, Y., Zhu, Z., Zhou, F., Liao, H., Nichols, T., Thompson, P., Zhu, H.. 2018-03-25. Large-scale neuroimaging and genetic study reveals genetic architecture of brain white matter microstructure. https://doi.org/10.1101/288555

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