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bioRxiv · 10.1101/239780

Cooperativity in Plant Plasma Membrane Intrinsic Proteins (PIPs): Mechanism of Increased Water Transport in Maize PIP1 Channels in Hetero-tetramers

Vajpai, M.·Mukherjee, M.·Sankararamakrishnan, R.
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Abstract

Plant aquaporins (AQPs) play vital roles in several physiological processes. Plasma membrane intrinsic proteins (PIPs) belong to the subfamily of plant AQPs and they are further divided into two closely related subgroups PIP1s and PIP2s. Members of the two subgroups have been shown to have different transport properties. While PIP2 members are efficient water channels, PIP1s from some plant species have been shown to be functionally inactive. Aquaporins form tetramers under physiological conditions. PIP2s can enhance the water transport of PIP1s when they form hetero-tetramers. However, the role of monomer-monomer interface and the significance of specific residues in enhancing the water permeation of PIP1s have not been investigated at atomic level. We have performed all-atom molecular dynamics (MD) simulations of homo-tetramers of ZmPIP1;2 and ZmPIP2;5 from Zea mays and hetero-tetramers containing ZmPIP1;2 and ZmPIP2;5 with different stoichiometries and configurations. ZmPIP1;2 in a tetramer assembly will have two interfaces, one formed by transmembrane segments TM4 and TM5 and the other formed by TM1 and TM2. We have analyzed channel radius profiles, water transport and potential of mean force profiles of ZmPIP1;2 monomers with different types of interfaces. Results of MD simulations clearly revealed that TM4-TM5 interface and not the TM1-TM2 interface is important in modulating the water transport of ZmPIP1;2. We generated in silico mutants of specific residues that are involved in contacts with adjacent monomers. MD simulations of mutant tetramers highlighted the importance of I93 residue from the TM2 segment of ZmPIP2;5 for the increased water transport in ZmPIP1;2.

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Vajpai, M., Mukherjee, M., Sankararamakrishnan, R.. 2017-12-25. Cooperativity in Plant Plasma Membrane Intrinsic Proteins (PIPs): Mechanism of Increased Water Transport in Maize PIP1 Channels in Hetero-tetramers. https://doi.org/10.1101/239780

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