Search bioRxiv⌕ Search

bioRxiv · 10.1101/221036

Multi-scale periodicities in the functional brain networks of patients with epilepsy and their effect on seizure detection

Abstract

The task of automated epileptic seizure detection and prediction by using non-invasive measurements such as scalp EEG signals or invasive, intracranial recordings, has been at the heart of epilepsy studies for at least three decades. By far, the most common approach for tackling this problem is to examine short-length recordings around the occurrence of a seizure - normally ranging between several seconds and up to a few minutes before and after the epileptic event - and identify any significant changes that occur before or during the event. An inherent assumption in these studies is the presence of a relatively constant EEG activity in the interictal period, which is presumably interrupted by the occurrence of a seizure. Here, we examine this assumption by using long-duration scalp EEG data (ranging between 21 and 94 hours) in patients with epilepsy, based on which we construct functional brain networks. Our results suggest that not only these networks vary over time, but they do so in a periodic fashion, exhibiting multiple peaks at periods ranging between around one and 24 hours. The effects of seizure onset on the functional brain network properties were found to be considerably smaller in magnitude compared to the changes due to the inherent periodic cycles of these networks. Importantly, the properties of the identified network periodic components (instantaneous phase, particularly that of short-term periodicities around 3 and 5 h) were found to be strongly correlated to seizure onset. These correlations were found to be largely absent between EEG signal periodicities and seizure onset, suggesting that higher specificity may be achieved by using network-based metrics. In turn, this suggests that to achieve more robust seizure detection and/or prediction, the evolution of the underlying longer term functional brain network periodic variations should be taken into account.\n\nHighlights- We have examined the long-term characteristics of EEG functional brain networks and their correlations to seizure onset\n\n- We show periodicities over multiple time scales in network summative properties (degree, efficiency, clustering coefficient)\n\n- We also show that, in addition to average network properties, similar periodicities exist in network topology using a novel measure based on the graph edit distance, suggesting that specific connectivity patterns recur over time\n\n- These periodic patterns were preserved when we corrected for the effects of volume conduction and were found to be of much larger magnitude compared to seizure-induced modulations\n\n- For the first time to our knowledge, we demonstrate that seizure onset occurs preferentially at specific phases of network periodic components that were consistently observed across subjects, particularly for shorter periodicities (around 3 and 5 hours)\n\n- These correlations between the phase of network periodic components and seizure onset were nearly absent when examining univariate properties (EEG signal power), suggesting that network-based measures are more tightly coupled with seizure onset compared to EEG signal-based measures\n\n- Our findings suggest that seizure detection and prediction algorithms may benefit significantly by taking into account longer-term variations in brain network properties\n\n- As we show strong evidence that shorter network-based periodicities (3-5 hours) are tightly coupled with seizure onset, our results pave the way for further investigation into the pathophysiology of seizure generation mechanisms beyond the well-known effects of circadian rhythms

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Christodoulakis, M., Anastasiadou, M. N., Papathanasiou, E. S., Papacostas, S. S., Hadjipapas, A., Mitsis, G. D.. 2017-11-20. Multi-scale periodicities in the functional brain networks of patients with epilepsy and their effect on seizure detection. https://doi.org/10.1101/221036

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Engineering and characterisation of AAVS1 FRT cell lines for inducible and dose-dependent gene expression

Investigating biological function with high reproducibility requires the generation of stable cell lines that offer precise and inducible transgene expression. However, traditional methods often suffer from the limitations of random genomic integration, including unpredictable expression levels, leaky basal activity, and disruption of endogenous loci. To address these challenges, we engineered a versatile RPE1 cell line by integrating a TetOn3G-FRT cassette into the AAVS1 safe-harbour locus using CRISPR/Cas9(D10A) nickase. This platform utilises the Flp-FRT recombination system to facilitate rapid, site-specific "plug-and-play" insertion of transgenes, combined with the Tet-On 3G system for tight, dose-dependent expression control. The resulting RPE1 AAVS1 FRT8 line enables highly consistent transgene induction across independent clones, behaving as a monoclonal population. We highlight the importance of rigorous cell line characterisation through a multi-omics approach. Whole genome sequencing identified precise heterozygous integration at the target locus and de novo genomic duplications on other chromosomes. By integrating WGS with high-resolution proteomics and cell cycle analysis, we confirmed that these alterations did not significantly perturb cellular homeostasis or phenotypic fitness. This work establishes a robust and reliable platform for the efficient generation of inducible AAVS1 FRT stable cell lines, facilitating reproducible research in modern molecular biology.

bioengineering↗

Raman-probe-derived biomarkers account for cartilage composition, structure, and viscoelastic properties

Raman spectroscopy is an inelastic light scattering technique that reflects the vibrational modes of the biochemical building blocks of the major constituents that comprise the cartilage extracellular matrix (ECM): glycosaminoglycans (GAG), type-II collagen (COL), and water. We investigated whether ECM-specific biomarkers measured with our recently developed arthroscopy-compatible Raman needle probe characterize the functional viscoelastic properties of articular cartilage explants. Equine osteochondral explants were harvested from high-load (femoral condyle) and low-load (intertrochlear groove) sites to evaluate Raman-derived biomarkers of cartilage structure and function. Viscoelastic material properties (equilibrium/dynamic modulus, phase shift) were determined by mechanical indentation. A computational fibril-reinforced biphasic material model was used to estimate the glycosaminoglycan-associated non-fibrillar-matrix modulus, the collagen-associated fibril-network modulus, and hydraulic permeability. Raman-derived biomarkers enabled evaluation of cartilage tissue composition and structure, accounting for 81% of the variation in GAG content, 53% of the variation in COL content, and 58% of the variation in COL anisotropy. Biomarkers also accounted for 81% of the variation in equilibrium modulus, 58% in dynamic modulus, and 51% in phase shift. For poroelastic properties, biomarkers accounted for 83% of the variation in non-fibrillar-matrix modulus, 25% of the variation in fibril-network modulus, and 34% of the variation in hydraulic permeability. Clinical Significance: Raman spectroscopy provides objective compositional biomarkers that account for viscoelastic material properties underlying articular cartilage function. These findings support its future use as an arthroscopic platform for objective assessment of cartilage injury, monitoring of disease progression, and evaluation of therapeutic interventions.

bioengineering↗

An adjuvant for in vivo CAR-T therapy potentiation against solid tumors

In vivo CAR-T therapy offers rapid and controllable T-cell engineering but has yet to achieve durable efficacy against solid tumors. Rather than focusing solely on CAR-T cells, we harness the intact immune system via an in vivo CAR-T adjuvant (iCTA). Composed of aluminum-manganese hydrogel, iCTA can form a spatially confined antigenic and immunostimulatory niche in-situ. By coupling controlled antigen exposure with STING-type I interferon signaling, iCTA not only recruited and reactivated CAR-T cells, but engage the CAR-negative immunocytes with enhanced dendritic-cell antigen presentation and mobilized endogenous antigen-specific T-cell responses. Combined with mRNA-LNP-mediated in vivo CAR-T generation, a single administration of iCTA increased CAR+ T-cell abundance in draining lymph nodes and blood by 2-fold. It also increased T and NK cell infiltration, established an IFNgamma-enriched tumor microenvironment, and reduced exhaustion-associated T-cell states. iCTA improved tumor regression and survival, establishing an adjuvant strategy to enhance in vivo CAR-T therapy.

bioengineering↗